ncRNA ID | novel_jre_miR118 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017440540.1:54969-55140 [+] |
Reference genome | wgs.5d |
Source | SRR1168887;SRR1168796;SRR1170956;SRR1170957;SRR1170959;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1168880;SRR1170965;SRR1168795;SRR1170967;SRR1170970;SRR1168881;SRR1168883;SRR1168884;SRR1168886 |
Length | 24 |
Mature sequence(if miRNA) | 149 - AUGCGAGGAUGAUAAGUAGAAUUU - 172 |
Stem-loop(if miRNA) |
--AUGG         CA C     A  C      G        G      C      A     C                 UUAUA       UACUUAUCA  U CGCAU CA CACAUA CAACGUGU AUUUGU AUUUUU UCAUU UAUUUAAAUACACAUAU     A       |||||||||  | ||||| || |||||| |||||||| |||||| |||||| ||||| |||||||||||||||||       AUGAAUAGU  G GCGUA GU GUGUGU GUUGUACA UAAACA UAAAAA AGUAA AUAAAUUUAUGUGUGUA     A UUUAAG         AG A     C  A      G        G      A      C     A                 UAACU |
Stem-loop sequence | AUGGUACUUAUCACAUCCGCAUACACCACAUAGCAACGUGUGAUUUGUCAUUUUUAUCAUUCUAUUUAAAUACACAUAUUUAUAAAUCAAUAUGUGUGUAUUUAAAUAAAAUGACAAAAAUAACAAAUGACAUGUUGGUGUGUGAUGCAUGCGAGGAUGAUAAGUAGAAUUU |