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BaseInfo

ncRNA ID novel_jre_miR118
Species Juglans regia
Class miRNA
Genome position NW_017440540.1:54969-55140 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1168796;SRR1170956;SRR1170957;SRR1170959;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1168880;SRR1170965;SRR1168795;SRR1170967;SRR1170970;SRR1168881;SRR1168883;SRR1168884;SRR1168886
Length 24
Mature sequence(if miRNA) 149 - AUGCGAGGAUGAUAAGUAGAAUUU - 172
Stem-loop(if miRNA) --AUGG         CA C     A  C      G        G      C      A     C                 UUAUA
      UACUUAUCA  U CGCAU CA CACAUA CAACGUGU AUUUGU AUUUUU UCAUU UAUUUAAAUACACAUAU     A
      |||||||||  | ||||| || |||||| |||||||| |||||| |||||| ||||| |||||||||||||||||
      AUGAAUAGU  G GCGUA GU GUGUGU GUUGUACA UAAACA UAAAAA AGUAA AUAAAUUUAUGUGUGUA     A
UUUAAG         AG A     C  A      G        G      A      C     A                 UAACU
Stem-loop sequence AUGGUACUUAUCACAUCCGCAUACACCACAUAGCAACGUGUGAUUUGUCAUUUUUAUCAUUCUAUUUAAAUACACAUAUUUAUAAAUCAAUAUGUGUGUAUUUAAAUAAAAUGACAAAAAUAACAAAUGACAUGUUGGUGUGUGAUGCAUGCGAGGAUGAUAAGUAGAAUUU