Search result

BaseInfo

ncRNA ID	novel_jre_miR96
Species	Juglans regia
Class	miRNA
Genome position	NW_017437902.1:4212-4319 [-]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170965;SRR1170970;SRR1168884
Length	24
Mature sequence(if miRNA)	1 - UUUUCAAAGCGAUUGCACGGCGUU - 24
Stem-loop(if miRNA)	--G                       -   AAUAAAUAU A       -  G      AA    GCCGUGCAGUCGCUUUGAAAAAA GUG         G GAUUUAC AU AAAAGA  U    ||||||||||||||||||||||| |||         | ||||||| || ||||||    CGGCACGUUAGCGAAACUUUUUU CAC         C CUAGGUG UA UUUUUU  U UUG                       U   --------- -       A  A      AA
Stem-loop sequence	GGCCGUGCAGUCGCUUUGAAAAAAGUGAAUAAAUAUGAGAUUUACAUGAAAAGAAAUUAAUUUUUUAAUAGUGGAUCCCACUUUUUUUCAAAGCGAUUGCACGGCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018987355.1	ncRNA:24   UUG-CGGCACGUUAGCGAAACUUUU   1   |||-||||*|=|||||||||||||| targets:1848   AACCGCCGCGUAAUCGCUUUGAAAA   1872 Target Full Sequence	2.0	PREDICTED: Juglans regia 7-deoxyloganetin glucosyltransferase-like (LOC109007610), mRNA	NA	coding protein	psRNATarget
XM_018953401.1	ncRNA:24   UUG-CGGCACGUUAGCGAAACUUUU   1   |||-||||*|=|||||||||||||| targets:2311   AACCGCCGCGUAAUCGCUUUGAAAA   2335 Target Full Sequence	2.0	PREDICTED: Juglans regia receptor protein kinase CLAVATA1-like (LOC108982113), mRNA	NA	coding protein	psRNATarget
XM_018970092.1	ncRNA:24   UUGCGGCACGUUAGCGAAACUUUU   1   ||||||*||||=|||||||||||| targets:3746   AACGCCUUGCAGUCGCUUUGAAAA   3769 Target Full Sequence	2.5	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   UUGCGGCACGUUAGCGAAACUUUU   1   |=||=|*||||=|||||||||||| targets:1273   AGCGUCAUGCAGUCGCUUUGAAAA   1296 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UUGCGGCACGUUAGCGAAACUUUU   1   |=||=|*||||=|||||||||||| targets:1392   AGCGUCAUGCAGUCGCUUUGAAAA   1415 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018987202.1	ncRNA:24   UUGC---GGCACGUUAGCGAAACUUUU   1   *=||---|=|*|=|||||||||||||| targets:1831   UGCGUAACUGCGUAAUCGCUUUGAAAA   1857 Target Full Sequence	3.0	PREDICTED: Juglans regia NAC domain-containing protein 91-like (LOC109007516), mRNA	NA	coding protein	psRNATarget