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BaseInfo

ncRNA ID	novel_jre_miR81
Species	Juglans regia
Class	miRNA
Genome position	NW_017436411.1:15809-15929 [-]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170965;SRR1170966
Length	24
Mature sequence(if miRNA)	1 - ACAAUCUCUAGGGGCUAUCGGACU - 24
Stem-loop(if miRNA)	--    U   AA             -----      G   --CAA         U        UA   UCUG GUA  CCCCUAGGGGUUG     GCUCAA UGG     AGGCCUUGG CUUGGAGG  U   |||| |||  |||||||||||||     |||||| |||     ||||||||| ||||||||  A   AGGC UAU  GGGGAUCUCUAAC     UGGGUU ACC     UUUGGAAUC GGACCUCU  C UC    -   -C             AAACG      -   CUAAG         U        CU
Stem-loop sequence	UCUGUGUAAACCCCUAGGGGUUGGCUCAAGUGGCAAAGGCCUUGGUCUUGGAGGUAUACUCUCUCCAGGUCUAAGGUUUGAAUCCCAUUGGGUGCAAACAAUCUCUAGGGGCUAUCGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018972115.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   *|||||||||||||||||*||||| targets:1729   UGUCCGAUAGCCCCUAGAAAUUGU   1752 Target Full Sequence	1.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like (LOC108996297), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018998889.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||=|||=|||||||||||||*| targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018998892.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||=|||=|||||||||||||*| targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018998894.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||=|||=|||||||||||||*| targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018998891.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||=|||=|||||||||||||*| targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018998893.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||=|||=|||||||||||||*| targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018976405.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||*|||=|||||||||||*||| targets:2510   AGUCAGAUGGCCCCUAGAGAGUGU   2533 Target Full Sequence	2.5	PREDICTED: Juglans regia switch 2 (LOC108999484), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018976397.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   ||||*|||=|||||||||||*||| targets:2516   AGUCAGAUGGCCCCUAGAGAGUGU   2539 Target Full Sequence	2.5	PREDICTED: Juglans regia switch 2 (LOC108999484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018996609.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   |*||||||=|||||||||*||||| targets:3767   AAUCCGAUGGCCCCUAGAAAUUGU   3790 Target Full Sequence	2.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018996606.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   |*||||||=|||||||||*||||| targets:3875   AAUCCGAUGGCCCCUAGAAAUUGU   3898 Target Full Sequence	2.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018996605.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   |*||||||=|||||||||*||||| targets:3882   AAUCCGAUGGCCCCUAGAAAUUGU   3905 Target Full Sequence	2.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018996603.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   |*||||||=|||||||||*||||| targets:3906   AAUCCGAUGGCCCCUAGAAAUUGU   3929 Target Full Sequence	2.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018996608.1	ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1   |*||||||=|||||||||*||||| targets:3978   AAUCCGAUGGCCCCUAGAAAUUGU   4001 Target Full Sequence	2.5	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X5, mRNA	NA	coding protein	psRNATarget