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BaseInfo

ncRNA ID novel_jre_miR81
Species Juglans regia
Class miRNA
Genome position NW_017436411.1:15809-15929 [-]
Reference genome wgs.5d
Source SRR1168887;SRR1170965;SRR1170966
Length 24
Mature sequence(if miRNA) 1 - ACAAUCUCUAGGGGCUAUCGGACU - 24
Stem-loop(if miRNA) --    U   AA             -----      G   --CAA         U        UA
  UCUG GUA  CCCCUAGGGGUUG     GCUCAA UGG     AGGCCUUGG CUUGGAGG  U
  |||| |||  |||||||||||||     |||||| |||     ||||||||| ||||||||  A
  AGGC UAU  GGGGAUCUCUAAC     UGGGUU ACC     UUUGGAAUC GGACCUCU  C
UC    -   -C             AAACG      -   CUAAG         U        CU
Stem-loop sequence UCUGUGUAAACCCCUAGGGGUUGGCUCAAGUGGCAAAGGCCUUGGUCUUGGAGGUAUACUCUCUCCAGGUCUAAGGUUUGAAUCCCAUUGGGUGCAAACAAUCUCUAGGGGCUAUCGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018972115.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  *|||||||||||||||||*|||||
targets:1729   UGUCCGAUAGCCCCUAGAAAUUGU   1752

1.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like (LOC108996297), transcript variant X5, mRNA NA coding protein psRNATarget
XM_018998889.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||=|||=|||||||||||||*|
targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151

2.5 PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016481), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018998892.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||=|||=|||||||||||||*|
targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151

2.5 PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018998894.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||=|||=|||||||||||||*|
targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151

2.5 PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018998891.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||=|||=|||||||||||||*|
targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151

2.5 PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016481), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018998893.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||=|||=|||||||||||||*|
targets:128   AGUCUGAUGGCCCCUAGAGAUUAU   151

2.5 PREDICTED: Juglans regia U-box domain-containing protein 12-like (LOC109016484), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018976405.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||*|||=|||||||||||*|||
targets:2510   AGUCAGAUGGCCCCUAGAGAGUGU   2533

2.5 PREDICTED: Juglans regia switch 2 (LOC108999484), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018976397.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  ||||*|||=|||||||||||*|||
targets:2516   AGUCAGAUGGCCCCUAGAGAGUGU   2539

2.5 PREDICTED: Juglans regia switch 2 (LOC108999484), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018996609.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  |*||||||=|||||||||*|||||
targets:3767   AAUCCGAUGGCCCCUAGAAAUUGU   3790

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X6, mRNA NA coding protein psRNATarget
XM_018996606.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  |*||||||=|||||||||*|||||
targets:3875   AAUCCGAUGGCCCCUAGAAAUUGU   3898

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X4, mRNA NA coding protein psRNATarget
XM_018996605.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  |*||||||=|||||||||*|||||
targets:3882   AAUCCGAUGGCCCCUAGAAAUUGU   3905

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018996603.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  |*||||||=|||||||||*|||||
targets:3906   AAUCCGAUGGCCCCUAGAAAUUGU   3929

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018996608.1
ncRNA:24   UCAGGCUAUCGGGGAUCUCUAACA   1
  |*||||||=|||||||||*|||||
targets:3978   AAUCCGAUGGCCCCUAGAAAUUGU   4001

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g65560-like (LOC109014231), transcript variant X5, mRNA NA coding protein psRNATarget