Search result

BaseInfo

ncRNA ID	novel_jre_miR71
Species	Juglans regia
Class	miRNA
Genome position	NW_017419192.1:53-139 [-]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170955;SRR1170956;SRR1170957;SRR1170959;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1168880;SRR1170964;SRR1170965;SRR1170967;SRR1170968;SRR1170969;SRR1170970;SRR1168883;SRR1168795;SRR1168886;SRR1168796
Length	21
Mature sequence(if miRNA)	1 - UUAGAUUCACGCACAAACUCG - 21
Stem-loop(if miRNA)	--                G   -  UAUA   -AUCGU    GUU   AGUUUGUGCGUGAAUC GAC CC    GGA      CGAU   U   |||||||||||||||| ||| ||    |||      ||||   UCAAACACGCACUUAG UUG GG    CCU      GCUA   U GC                A   U  -CAG   AUACUU    AUU
Stem-loop sequence	AGUUUGUGCGUGAAUCGGACCCUAUAGGAAUCGUCGAUGUUUUUUAAUCGUUCAUAUCCGACGGUGUUAGAUUCACGCACAAACUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018985717.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3464   GGAGUUUGUGCGUGAAUCUAA   3484 Target Full Sequence	0.0	PREDICTED: Juglans regia protein argonaute 2 (LOC109006442), mRNA	NA	coding protein	psRNATarget
XM_018949992.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|=|||||||||||||||||| targets:3929   GGGGUUUGUGCGUGAAUCUAA   3949 Target Full Sequence	1.0	PREDICTED: Juglans regia protein argonaute 2-like (LOC108979335), mRNA	NA	coding protein	psRNATarget
XM_018949992.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|=|||||||||||||||||| targets:4216   GGGGUUUGUGCGUGAAUCUAA   4236 Target Full Sequence	1.0	PREDICTED: Juglans regia protein argonaute 2-like (LOC108979335), mRNA	NA	coding protein	psRNATarget
XM_018949992.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|=|||||||||||||||||| targets:4503   GGGGUUUGUGCGUGAAUCUAA   4523 Target Full Sequence	1.0	PREDICTED: Juglans regia protein argonaute 2-like (LOC108979335), mRNA	NA	coding protein	psRNATarget
XM_018952785.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   |*|||||*||||||||*|||| targets:894   CCAGUUUAUGCGUGAACCUAA   914 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized mitochondrial protein AtMg00810-like (LOC108981564), mRNA	NA	coding protein	psRNATarget