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BaseInfo

ncRNA ID	novel_jre_miR68
Species	Juglans regia
Class	miRNA
Genome position	NW_017408349.1:780-946 [-]
Reference genome	wgs.5d
Source	SRR1168887
Length	24
Mature sequence(if miRNA)	144 - AAUGAUAUUUGCAGUUGUGAGUGU - 167
Stem-loop(if miRNA)	--    A   U          -           GU      A             --AAUGAAUAAAUA  AGACUCACAUUAAA   AAUG UAU UGCAGUUGUG AGUGUGUAAAU  CGUACA UCGUUUUGAAAAA              UG              A   |||| ||| |||||||||| |||||||||||  |||||| |||||||||||||              ||   UUAC AUG AUGUUAGCAC UUACGCAUUUA  GCAUGU AGCAAAACUUUUU              UA              G CA    G   U          C           UG      C             CUCACCCUAGAUAA  AUUUUUUAAUUAAA
Stem-loop sequence	AAUGAUAUUUGCAGUUGUGAGUGUGUAAAUGUCGUACAAUCGUUUUGAAAAAAAUGAAUAAAUAUGAGACUCACAUUAAAAGAAAUUAAUUUUUUAAUAAUAGAUCCCACUCUUUUUCAAAACGACUGUACGGUAUUUACGCAUUCCACGAUUGUAUGUAGCAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018970092.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   ||=|*|||||||||||*||||||| targets:3860   ACGCACACAACUGCAACUAUCAUU   3883 Target Full Sequence	1.5	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018986207.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   =|||||||=||||||=|||||||| targets:1748   GCACUCACGACUGCAGAUAUCAUU   1771 Target Full Sequence	2.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018986206.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   =|||||||=||||||=|||||||| targets:1922   GCACUCACGACUGCAGAUAUCAUU   1945 Target Full Sequence	2.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018986205.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   =|||||||=||||||=|||||||| targets:2003   GCACUCACGACUGCAGAUAUCAUU   2026 Target Full Sequence	2.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   ||||||||||=|||||*||||||| targets:1991   ACACUCACAAUUGCAACUAUCAUU   2014 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   =||=||||=|||||||*||||||| targets:3297   GCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UGUGAGUGUUGACGUUUAUAGUAA   1   =||=||||=|||||||*||||||| targets:3300   GCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget