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BaseInfo

ncRNA ID	novel_jre_miR52
Species	Juglans regia
Class	miRNA
Genome position	NW_017389931.1:40240-40340 [-]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170955;SRR1170956;SRR1170965;SRR1170966;SRR1170970
Length	24
Mature sequence(if miRNA)	1 - UUUCAAAGUGAUUGCACGGCACUU - 24
Stem-loop(if miRNA)	----  GA   A                 AU    - UC   U     AUUUUU     GC  CGU CAAUCGCUUUGAAAAAG  UGAG A  UAC AUUCA      U     ||  ||| |||||||||||||||||  |||| |  ||| |||||     CG  GCA GUUAGUGAAACUUUUUC  ACUU U  AUG UGAGU      U UUCA  --   C                 --    A UU   C     GUACUU
Stem-loop sequence	GCGACGUACAAUCGCUUUGAAAAAGAUUGAGAUCUACUAUUCAAUUUUUUUUUCAUGUGAGUCGUAUUUAUUCACUUUUUCAAAGUGAUUGCACGGCACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   ||||*|||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget