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BaseInfo

ncRNA ID novel_jre_miR38
Species Juglans regia
Class miRNA
Genome position NW_017389726.1:8538-8647 [-]
Reference genome wgs.5d
Source SRR1168887;SRR1170966
Length 24
Mature sequence(if miRNA) 1 - UUUCAAAGCGACUGUACGACGUUU - 24
Stem-loop(if miRNA) --   C U                  -   AAAUAAAUAU   A     --        AA
  ACG C UGCAGUCGCUUUGAAAAA AGU          GGG UCCAC  AUGAAAAA  A
  ||| | |||||||||||||||||| |||          ||| |||||  ||||||||  A
  UGC G AUGUCAGCGAAACUUUUU UCA          CCC AGGUG  UAUUUUUU  U
UU   A C                  C   ----------   C     AG        AA
Stem-loop sequence ACGCCUUGCAGUCGCUUUGAAAAAAGUAAAUAAAUAUGGGAUCCACAUGAAAAAAAAAUAAUUUUUUAUGAGUGGACCCCACUCUUUUUCAAAGCGACUGUACGACGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019004598.1
ncRNA:24   UUUGCAGCAUGUCAGCGAAACUUU   1
  ||=||||*|=||||||||||||||
targets:1272   AAGCGUCAUGCAGUCGCUUUGAAA   1295

2.0 PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018980788.1
ncRNA:24   UUUGCAGCAUGUCAGCGAAACUUU   1
  ||=||*|||=||||||||||||||
targets:1608   AAGCGCCGUGCAGUCGCUUUGAAA   1631

2.0 PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA NA coding protein psRNATarget
XM_019004597.1
ncRNA:24   UUUGCAGCAUGUCAGCGAAACUUU   1
  ||=||||*|=||||||||||||||
targets:1391   AAGCGUCAUGCAGUCGCUUUGAAA   1414

2.0 PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992483.1
ncRNA:24   UUUGCAGCAUGUCAGCGAAACUUU   1
  ||=||||*|==|||||||||||||
targets:2411   AAGCGUCUUGUAGUCGCUUUGAAA   2434

3.0 PREDICTED: Juglans regia elongation factor G-2, chloroplastic (LOC109011319), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018970092.1
ncRNA:24   UUUGCAGCAUGUCAGCGAAACUUU   1
  |||||*|*|=||||||||||||||
targets:3745   AAACGCCUUGCAGUCGCUUUGAAA   3768

3.0 PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA NA coding protein psRNATarget