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BaseInfo

ncRNA ID	novel_jre_miR33
Species	Juglans regia
Class	miRNA
Genome position	NW_017436474.1:3307-3418 [+]
Reference genome	wgs.5d
Source	SRR1168796;SRR1170955;SRR1170957;SRR1170958;SRR1170970;SRR1168881;SRR1168884;SRR1168886
Length	24
Mature sequence(if miRNA)	89 - UUUCAAAGUGAUUGCACGGUACUU - 112
Stem-loop(if miRNA)	--GCGA                     ---------A          C   U        A       CGUGCAGUCGCUUUGAAAAAG          GUGAGAUCCA UAU AAAAAAUU A       |||||||||||||||||||||          |||||||||| ||| ||||||||       GCACGUUAGUGAAACUUUUUU          UACUCUGGGU AUA UUUUUUAA U UUCAUG                     CACUUAUUUA          -   U        U
Stem-loop sequence	GCGACGUGCAGUCGCUUUGAAAAAGAGUGAGAUCCACUAUUAAAAAAUUAAUUAAUUUUUUUAUAUGGGUCUCAUAUUUAUUCACUUUUUUCAAAGUGAUUGCACGGUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   ||||||||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget