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BaseInfo

ncRNA ID novel_jre_miR12
Species Juglans regia
Class miRNA
Genome position NW_017389069.1:311569-311788 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1170955;SRR1168883
Length 23
Mature sequence(if miRNA) 1 - UUUUCGUGAGACAGAAGACCUUC - 23
Stem-loop(if miRNA) --               AG               A    -AAAA             -C                UC    CACC        UC               A
  UUUUCGUGAGACAGA  ACCUUCUUGUUCUUU AAAA     AAUCUUUUAUUUU  UUUUCAAUAAAAAAAA  AUGU    GUCGGUAU  GGUUUGGUGUGUCAA C
  |||||||||||||||  ||||||||||||||| ||||     |||||||||||||  ||||||||||||||||  ||||    ||||||||  ||||||||||||||| G
  AAAAGUAUUCUGUCU  UGGAAGAAUAAGAGA UUUU     UUAGAAAAUAAAA  AAAAGUUAUUUUUUUU  UACA    CAGCUAUG  CUAAACCACGCAGUU G
UU               AA               G    AAAAG             AU                -U    AUCA        CA               C
Stem-loop sequence UUUUCGUGAGACAGAAGACCUUCUUGUUCUUUAAAAAAAAAAAUCUUUUAUUUUCUUUUCAAUAAAAAAAAUCAUGUCACCGUCGGUAUUCGGUUUGGUGUGUCAAACGGCUUGACGCACCAAAUCACGUAUCGACACUAACAUUUUUUUUUUAUUGAAAAUAAAAAUAAAAGAUUGAAAAUUUUGAGAGAAUAAGAAGGUAAUCUGUCUUAUGAAAAUU