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BaseInfo

ncRNA ID	novel_jre_miR9
Species	Juglans regia
Class	miRNA
Genome position	NW_017389652.1:83040-83141 [-]
Reference genome	wgs.5d
Source	SRR1168886;SRR1168887;SRR1170955;SRR1170959;SRR1170960;SRR1168880;SRR1170962;SRR1170964;SRR1170965;SRR1170966;SRR1170970;SRR1168883;SRR1168884
Length	20
Mature sequence(if miRNA)	83 - CUCUCUCUCAAGGGCUUCUU - 102
Stem-loop(if miRNA)	--C          -        U    GC   AG   UUUA   AUU     UGA    UCUCUCUCAA GGGCUUCU ACCU  GCC  AAU    UGU   CUUAC   U    |||||||||| |||||||| ||||  |||  |||    |||   |||||    AGAGGGGGUU CCCGAAGA UGGG  UGG  UUA    ACG   GAAUG   C GUC          U        U    GU   GG   ----   ---     UUA
Stem-loop sequence	CUCUCUCUCAAGGGCUUCUUACCUGCGCCAGAAUUUUAUGUAUUCUUACUGAUCAUUGUAAGGCAAUUGGGGUUGGGGUUAGAAGCCCUUUGGGGGAGACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018978906.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018978911.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018978899.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018978893.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018978884.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978873.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||=|||||||||||| targets:1026   AAGAAGCUCUUGAGAGAGAG   1045 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952285.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   *=|||*|||||||||||||| targets:951   UGGAAUCCCUUGAGAGAGAG   970 Target Full Sequence	2.0	PREDICTED: Juglans regia U-box domain-containing protein 44-like (LOC108981193), mRNA	NA	coding protein	psRNATarget
XM_018950244.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   **||||||=||||||||||| targets:2108   CUGAAGCCUUUGAGAGAGAG   2127 Target Full Sequence	2.5	PREDICTED: Juglans regia glutamate receptor 2.5-like (LOC108979550), mRNA	NA	coding protein	psRNATarget
XM_019004251.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   |||||||||*|||||||||* targets:1353   AAGAAGCCCGUGAGAGAGAC   1372 Target Full Sequence	2.5	PREDICTED: Juglans regia probable membrane-associated kinase regulator 4 (LOC109021596), mRNA	NA	coding protein	psRNATarget
XM_018962015.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   *||||*|=|||||||||||| targets:1370   UAGAACCUCUUGAGAGAGAG   1389 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor bHLH18-like (LOC108988687), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018970766.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   =||||||*|||||||||||* targets:1275   GAGAAGCACUUGAGAGAGAU   1294 Target Full Sequence	2.5	PREDICTED: Juglans regia peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (LOC108995241), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018970765.1	ncRNA:20   UUCUUCGGGAACUCUCUCUC   1   =||||||*|||||||||||* targets:1275   GAGAAGCACUUGAGAGAGAU   1294 Target Full Sequence	2.5	PREDICTED: Juglans regia peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (LOC108995241), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018969951.1	ncRNA:20   UUC---UUCGGGAACUCUCUCUC   1   |||---||||||||||||||||| targets:1727   AAGCAAAAGCCCUUGAGAGAGAG   1749 Target Full Sequence	3.0	PREDICTED: Juglans regia non-specific phospholipase C2 (LOC108994653), mRNA	NA	coding protein	psRNATarget