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BaseInfo

ncRNA ID novel_jre_miR4
Species Juglans regia
Class miRNA
Genome position NW_017389422.1:218294-218398 [+]
Reference genome wgs.5d
Source SRR1168886;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1170965;SRR1170967;SRR1170968;SRR1170969;SRR1170970;SRR1168881;SRR1168883;SRR1168884
Length 24
Mature sequence(if miRNA) 1 - AAGUGGUGUGUAGAGUAUGAGACU - 24
Stem-loop(if miRNA) --                A  AG    AUGUUUAAA           GUGGG
  AAGUGGUGUGUAGAGU UG  ACUU         AUUUUUCUUUG     G
  |||||||||||||||| ||  ||||         |||||||||||     C
  UUCACUACACAUCUCA AC  UGAA         UGAAGAGAAGU     A
AA                C  CU    GAUUCAUCG           AGUAU
Stem-loop sequence AAGUGGUGUGUAGAGUAUGAGACUUAUGUUUAAAAUUUUUCUUUGGUGGGGCAUAUGAUGAAGAGAAGUGCUACUUAGAAGUUCCACACUCUACACAUCACUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018950294.1
ncRNA:24   UCAGAGUAUGAGAUGUGUGGUGAA   1
  *****|||||*|||=|||||||||
targets:1162   UAGGGCAUACACUAUACACCACUU   1185

2.5 PREDICTED: Juglans regia dolichyl-phosphate beta-glucosyltransferase-like (LOC108979567), mRNA NA coding protein psRNATarget