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BaseInfo

ncRNA ID	novel_gra_miR679
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:29008736-29008874 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	24
Mature sequence(if miRNA)	116 - AAGCGCCGCUAUAGAUCAUGGCCU - 139
Stem-loop(if miRNA)	--  GU                 UC    --AC      C         UAA  G  U        U  UU   GU  UGGUCUAUAGCGGCGCU  UAUC    AAACGC GCUGAAGAC   GA CU UAGCGGCG UU  A   ||  |||||||||||||||||  ||||    |||||| |||||||||   || || |||||||| ||  A   CG  ACUAGAUAUCGCCGCGA  AUAG    UUUGCG CGAUUUCUG   UU GA AUCGCCGC AA  U UC  GU                 --    GUCU      A         UGG  A  U        C  UA
Stem-loop sequence	GUGUUGGUCUAUAGCGGCGCUUCUAUCACAAACGCCGCUGAAGACUAAGAGCUUUAGCGGCGUUUUUAAUAUAACCGCCGCUAUAGAUUGGUGUCUUUAGCAGCGUUUUCUGGAUAAGCGCCGCUAUAGAUCAUGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012585291.1	ncRNA:24   UCCGGUACUAGAUAUCGCCGCGAA   1   ||||||||=||||||||||||=|| targets:769   AGGCCAUGGUCUAUAGCGGCGUUU   792 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 56-like (LOC105765998), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 56-like(LOC105765998)	coding protein	psRNATarget
XM_012585291.1	ncRNA:24   UCCGGUACUAGAUAUCGCCGCGAA   1   ||*|||||=||||||||||||=|| targets:812   AGUCCAUGGUCUAUAGCGGCGUUU   835 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 56-like (LOC105765998), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 56-like(LOC105765998)	coding protein	psRNATarget
XM_012586817.1	ncRNA:24   UCCGGUACUAGAUAUCGCCGCGAA   1   ||**|||||*||*||||||||||| targets:3384   AGAACAUGACCUUUAGCGGCGCUU   3407 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable disease resistance protein At4g27220 (LOC105767319), mRNA	probable disease resistance protein At4g27220(LOC105767319)	coding protein	psRNATarget