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BaseInfo

ncRNA ID	novel_gra_miR675
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:1606103-1606193 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	23
Mature sequence(if miRNA)	69 - AAGAGGAUAAUGUGCUUCAACAC - 91
Stem-loop(if miRNA)	--     -U     A         ---UAAUAUAAUAUUU       C   GUUGA  UAUAU UAUUCUUUU                AGAAUUG U   |||||  ||||| |||||||||                |||||||   CAACU  GUGUA AUAGGAGAA                UCUUGAU U CA     UC     -         UAAAUACCCAAUUCCU       A
Stem-loop sequence	GUUGAUUAUAUAUAUUCUUUUUAAUAUAAUAUUUAGAAUUGCUUAUAGUUCUUCCUUAACCCAUAAAUAAGAGGAUAAUGUGCUUCAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012636769.1	ncRNA:23   CACAACUUCGUGUAAUAGGAGAA   1   |||*||=||||||||||||||*| targets:2344   GUGCUGGAGCACAUUAUCCUCAU   2366 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii asparagine--tRNA ligase, cytoplasmic 2-like (LOC105804249), mRNA	asparagine--tRNA ligase, cytoplasmic 2-like(LOC105804249)	coding protein	psRNATarget
XM_012603030.1	ncRNA:23   CAC--AACUUCGUGUAAUAGGAGAA   1   |||--|||||*||||||||||||*| targets:1237   GUGCGUUGAAACACAUUAUCCUCCU   1261 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii zinc finger protein ZAT5-like (LOC105779266), mRNA	zinc finger protein ZAT5-like(LOC105779266)	coding protein	psRNATarget
XM_012607090.1	ncRNA:23   CACAACUUCGUGUAAUAGGAGAA   1   |||*|*|||||||||||||||*| targets:1931   GUGCUAAAGCACAUUAUCCUCCU   1953 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii synaptotagmin-4-like (LOC105782386), transcript variant X2, mRNA	synaptotagmin-4-like(LOC105782386)	coding protein	psRNATarget
XM_012607089.1	ncRNA:23   CACAACUUCGUGUAAUAGGAGAA   1   |||*|*|||||||||||||||*| targets:1968   GUGCUAAAGCACAUUAUCCUCCU   1990 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii synaptotagmin-4-like (LOC105782386), transcript variant X1, mRNA	synaptotagmin-4-like(LOC105782386)	coding protein	psRNATarget