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BaseInfo

ncRNA ID	novel_gra_miR673
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr5:56339357-56339471 [+]
Reference genome	Graimondii2_0
Source	SRR959924
Length	22
Mature sequence(if miRNA)	94 - UUUCCUAUGCCCCCCAUUCCAC - 115
Stem-loop(if miRNA)	--    G     U   -          AUUUCUCU     CUUAUAUAUAUACACACA   GGAA UGGGG GCG AGGAAAGAUC        UCUCU                  C   |||| ||||| ||| ||||||||||        |||||                  A   CCUU ACCCC CGU UCCUUUCUAG        AGAGA                  C CA    -     C   A          ACCAAACU     AACAUACACACACACACA
Stem-loop sequence	GGAAGUGGGGUGCGAGGAAAGAUCAUUUCUCUUCUCUCUUAUAUAUAUACACACACACACACACACACACAUACAAAGAGAUCAAACCAGAUCUUUCCUAUGCCCCCCAUUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012597537.1	ncRNA:22   CACCUUACCCCCCGUAUCCUUU   1   *|||*|||||||||||*||||| targets:646   UUGGCAUGGGGGGCAUCGGAAA   667 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii disease resistance protein RPP8-like (LOC105774984), transcript variant X1, mRNA	disease resistance protein RPP8-like(LOC105774984)	coding protein	psRNATarget
XM_012597539.1	ncRNA:22   CACCUUACCCCCCGUAUCCUUU   1   *|||*|||||||||||*||||| targets:673   UUGGCAUGGGGGGCAUCGGAAA   694 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii disease resistance protein RPP8-like (LOC105774984), transcript variant X2, mRNA	disease resistance protein RPP8-like(LOC105774984)	coding protein	psRNATarget
XM_012603870.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:862   GUGGAAUGGGGGGCAUAGGCAAA   884 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X1, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603876.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:884   GUGGAAUGGGGGGCAUAGGCAAA   906 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X2, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603896.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:863   GUGGAAUGGGGGGCAUAGGCAAA   885 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X4, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget
XM_012603885.1	ncRNA:22   CACCUUACCCCCCGUAUCC-UUU   1   |||||||||||||||||||-||| targets:863   GUGGAAUGGGGGGCAUAGGCAAA   885 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii probable disease resistance protein At5g63020 (LOC105779890), transcript variant X3, mRNA	probable disease resistance protein At5g63020(LOC105779890)	coding protein	psRNATarget