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BaseInfo

ncRNA ID	novel_gra_miR666
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr2:32157010-32157076 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	44 - GCUAAAGAACAUGACCUUUAGAGG - 67
Stem-loop(if miRNA)	--        A    AC      A       UA   GCUAAAGA CAUG  CUUUAG GGCGUUU  C   |||||||| ||||  |||||| |||||||  C   CGAUUUCU GUAC  GAAAUC CCGCAAA  A GG        A    AA      G       CA
Stem-loop sequence	GCUAAAGAACAUGACCUUUAGAGGCGUUUUACCAACAAACGCCGCUAAAGAACAUGAUCUUUAGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||=|||||||||||||||| targets:1146   CCGCUAAGGGUCAUGUUCUUUAGC   1169 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||||*|||||||||||||| targets:1061   CCGCUAAAGAUCAUGUUCUUUAGC   1084 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1232   UCGCUUAAGGUCAUGUUCUUUAGC   1255 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1318   UCGCUUAAGGUCAUGUUCUUUAGC   1341 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||=|||||||||||||||| targets:1148   CCGCUAAGGGUCAUGUUCUUUAGC   1171 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||||*|||||||||||||| targets:1063   CCGCUAAAGAUCAUGUUCUUUAGC   1086 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1234   UCGCUUAAGGUCAUGUUCUUUAGC   1257 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1320   UCGCUUAAGGUCAUGUUCUUUAGC   1343 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||=|||||||||||||||| targets:1319   CCGCUAAGGGUCAUGUUCUUUAGC   1342 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*||||||*|||||||||||||| targets:1234   CCGCUAAAGAUCAUGUUCUUUAGC   1257 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1405   UCGCUUAAGGUCAUGUUCUUUAGC   1428 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   =|*||*|||||||||||||||||| targets:1491   UCGCUUAAGGUCAUGUUCUUUAGC   1514 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*|||||||||*||||||||||| targets:1189   CCGCUAAAGGUCUUGUUCUUUAGC   1212 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*|||||||||*||||||||||| targets:1191   CCGCUAAAGGUCUUGUUCUUUAGC   1214 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GGAGAUUUCCAGUACAAGAAAUCG   1   ||*|||||||||*||||||||||| targets:1362   CCGCUAAAGGUCUUGUUCUUUAGC   1385 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget