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BaseInfo

ncRNA ID novel_gra_miR664
Species Gossypium raimondii
Class miRNA
Genome position Chr2:62511183-62511236 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - ACAUUGAGCUUGAAGUUUGAUCAU - 24
Stem-loop(if miRNA) --      U      -   UCU    UG
  GAUCAA CUUUAA CUC   AUGU  C
  |||||| |||||| |||   ||||  G
  CUAGUU GAAGUU GAG   UACA  U
UA      U      C   --U    UU
Stem-loop sequence GAUCAAUCUUUAACUCUCUAUGUUGCGUUUACAUUGAGCUUGAAGUUUGAUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012618356.1
ncRNA:24   UACUAGUUUGAAGUUCGAGUUACA   1
  ||-||||||*|||||*||||||||
targets:1027   AU-AUCAAAAUUCAAACUCAAUGU   1049

2.5 PREDICTED: Gossypium raimondii LOB domain-containing protein 16-like (LOC105790648), transcript variant X1, mRNA LOB domain-containing protein 16-like(LOC105790648) coding protein psRNATarget