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BaseInfo

ncRNA ID	novel_gra_miR661
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:46567439-46567520 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	62 - AUUUCAUUUCUGAUGACACCU - 82
Stem-loop(if miRNA)	--      -    C   UU   -AU    AGG    U    U   GUGUCG CAGA AUG  AUU   AAUA   UUGA CAUU A   |||||| |||| |||  |||   ||||   |||| |||| G   CACAGU GUCU UAC  UAA   UUAU   AACU GUAG U UC      A    U   UU   AGC    AGA    -    U
Stem-loop sequence	GUGUCGCAGACAUGUUAUUAUAAUAAGGUUGAUCAUUUAGUUGAUGUCAAAGAUAUUCGAAAUUUCAUUUCUGAUGACACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012585112.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:860   AGUUUUCAUCAGAAAUGAAAA   880 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X6, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012585109.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:874   AGUUUUCAUCAGAAAUGAAAA   894 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X3, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012585107.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:893   AGUUUUCAUCAGAAAUGAAAA   913 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X1, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012585108.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:907   AGUUUUCAUCAGAAAUGAAAA   927 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X2, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012585111.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:909   AGUUUUCAUCAGAAAUGAAAA   929 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X5, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012585110.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:922   AGUUUUCAUCAGAAAUGAAAA   942 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105765843), transcript variant X4, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105765843)	coding protein	psRNATarget
XM_012619625.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:1010   AGUUUUCAUCAGAAAUGAAAA   1030 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105791536), transcript variant X4, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105791536)	coding protein	psRNATarget
XM_012619626.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:1145   AGUUUUCAUCAGAAAUGAAAA   1165 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105791536), transcript variant X5, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105791536)	coding protein	psRNATarget
XM_012619624.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:1227   AGUUUUCAUCAGAAAUGAAAA   1247 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105791536), transcript variant X3, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105791536)	coding protein	psRNATarget
XM_012619623.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:1283   AGUUUUCAUCAGAAAUGAAAA   1303 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105791536), transcript variant X2, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105791536)	coding protein	psRNATarget
XM_012619622.1	ncRNA:21   UCCACAGUAGUCUUUACUUUA   1   ||*|*|||||||||||||||* targets:1296   AGUUUUCAUCAGAAAUGAAAA   1316 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii polyadenylate-binding protein-interacting protein 5-like (LOC105791536), transcript variant X1, mRNA	polyadenylate-binding protein-interacting protein 5-like(LOC105791536)	coding protein	psRNATarget