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BaseInfo

ncRNA ID	novel_gra_miR657
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:14495185-14495357 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	23
Mature sequence(if miRNA)	151 - UGUGGAUUGCCACAUAGAUGACA - 173
Stem-loop(if miRNA)	--U     U   C  A         CAAA  A     C         ---------        U            UUUU   A     UAA    GUGGA UGC AC UAGAUGACA    AA AUUUA UUAAUUUUU         AAAAAUUU AAAAAUAUAUAA    AAU AUUUU   U    ||||| ||| || |||||||||    || ||||| |||||||||         |||||||| ||||||||||||    ||| |||||    CACCU AUG UG AUCUACUGU    UU UAAAU AAUUAAAAA         UUUUUAAG UUUUUAUAUAUU    UUG UAAAA   U CUG     U   -  C         AUAG  A     U         AUUUUAAAU        U            ---U   A     UUU
Stem-loop sequence	UGUGGAUUGCCACAUAGAUGACACAAAAAAAUUUACUUAAUUUUUAAAAAUUUUAAAAAUAUAUAAUUUUAAUAAUUUUUAAUUUUUAAAAUAGUUUUUAUAUAUUUUUUGAAUUUUUUAAAUUUUAAAAAAUUAAUUAAAUAUUGAUAUGUCAUCUACGUGUAUUCCACGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012633334.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||-||||*|*||||||||||||= targets:1661   UG-CAUCCACGUGGCAAUCCACG   1682 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 10-like (LOC105801966), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 10-like(LOC105801966)	coding protein	psRNATarget
XM_012633339.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||-||||*|*||||||||||||= targets:1739   UG-CAUCCACGUGGCAAUCCACG   1760 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 10-like (LOC105801966), transcript variant X5, mRNA	DEAD-box ATP-dependent RNA helicase 10-like(LOC105801966)	coding protein	psRNATarget
XM_012633338.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||-||||*|*||||||||||||= targets:1762   UG-CAUCCACGUGGCAAUCCACG   1783 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 10-like (LOC105801966), transcript variant X4, mRNA	DEAD-box ATP-dependent RNA helicase 10-like(LOC105801966)	coding protein	psRNATarget
XM_012633335.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||-||||*|*||||||||||||= targets:1782   UG-CAUCCACGUGGCAAUCCACG   1803 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 10-like (LOC105801966), transcript variant X2, mRNA	DEAD-box ATP-dependent RNA helicase 10-like(LOC105801966)	coding protein	psRNATarget
XM_012633336.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||-||||*|*||||||||||||= targets:1827   UG-CAUCCACGUGGCAAUCCACG   1848 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 10-like (LOC105801966), transcript variant X3, mRNA	DEAD-box ATP-dependent RNA helicase 10-like(LOC105801966)	coding protein	psRNATarget
XM_012604408.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||--=|||*|||||||||||||* targets:2049   UG--GUCUUUGUGGCAAUCCACU   2069 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii leucine-rich repeat receptor protein kinase EMS1-like (LOC105780212), transcript variant X1, mRNA	leucine-rich repeat receptor protein kinase EMS1-like(LOC105780212)	coding protein	psRNATarget
XM_012604409.1	ncRNA:23   ACAGUAGAUACACCGUUAGGUGU   1   ||--=|||*|||||||||||||* targets:2219   UG--GUCUUUGUGGCAAUCCACU   2239 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii leucine-rich repeat receptor protein kinase EMS1-like (LOC105780212), transcript variant X2, mRNA	leucine-rich repeat receptor protein kinase EMS1-like(LOC105780212)	coding protein	psRNATarget