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BaseInfo

ncRNA ID	novel_gra_miR653
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:21276813-21276877 [+]
Reference genome	Graimondii2_0
Source	SRR616257;SRR616255
Length	25
Mature sequence(if miRNA)	1 - CUAAAGAACAUGACCUUUAGCGGCU - 25
Stem-loop(if miRNA)	--      AA    AC         CUCUUUU   CUAAAG  CAUG  CUUUAGCGG       A   ||||||  ||||  |||||||||       U   GAUUUC  GUAC  GAAAUCGCC       C GC      CA    AA         ACAAGCA
Stem-loop sequence	CUAAAGAACAUGACCUUUAGCGGCUCUUUUAUCACGAACACCGCUAAAGAACAUGACCUUUAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--||||||=||||||||||||||| targets:1142   AGCACCGCUAAGGGUCAUGUUCUUUAG   1168 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1   ||-|||||||||*||||||||||||| targets:1058   AGUCCGCUAAAGAUCAUGUUCUUUAG   1083 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1230   CGUCGCUUAAGGUCAUGUUCUUUAG   1254 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1316   CGUCGCUUAAGGUCAUGUUCUUUAG   1340 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--||||||=||||||||||||||| targets:1144   AGCACCGCUAAGGGUCAUGUUCUUUAG   1170 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1   ||-|||||||||*||||||||||||| targets:1060   AGUCCGCUAAAGAUCAUGUUCUUUAG   1085 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1232   CGUCGCUUAAGGUCAUGUUCUUUAG   1256 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1318   CGUCGCUUAAGGUCAUGUUCUUUAG   1342 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--||||||=||||||||||||||| targets:1315   AGCACCGCUAAGGGUCAUGUUCUUUAG   1341 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1   ||-|||||||||*||||||||||||| targets:1231   AGUCCGCUAAAGAUCAUGUUCUUUAG   1256 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1403   CGUCGCUUAAGGUCAUGUUCUUUAG   1427 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*||||||||||||||||| targets:1489   CGUCGCUUAAGGUCAUGUUCUUUAG   1513 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--|||||||||||*|||||||||| targets:1185   AGCACCGCUAAAGGUCUUGUUCUUUAG   1211 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--|||||||||||*|||||||||| targets:1187   AGCACCGCUAAAGGUCUUGUUCUUUAG   1213 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1   |||--|||||||||||*|||||||||| targets:1358   AGCACCGCUAAAGGUCUUGUUCUUUAG   1384 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*|||||||||||=||||| targets:1273   CGUCGCUUAAGGUCAUGUUUUUUAG   1297 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*|||||||||||=||||| targets:1275   CGUCGCUUAAGGUCAUGUUUUUUAG   1299 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1   *|=||||*|||||||||||=||||| targets:1446   CGUCGCUUAAGGUCAUGUUUUUUAG   1470 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget