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BaseInfo

ncRNA ID novel_gra_miR649
Species Gossypium raimondii
Class miRNA
Genome position Chr13:4226010-4226072 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 40 - AUCGCGCUGACGUGGACGCGGUUU - 63
Stem-loop(if miRNA) --      CU     G A       UG    
  AUCGCG  UACGU G CGCGAUU  UUGCC
  ||||||  ||||| | |||||||  ||||A
  UGGCGC  GUGCA U GCGCUAA  AAUGC
UU      AG     G C       UG    
Stem-loop sequence AUCGCGCUUACGUGGACGCGAUUUGUUGCCACGUAAGUAAUCGCGCUGACGUGGACGCGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012622070.1
ncRNA:24   UUUGGCGCAGGUGCAGUCGCGCUA   1
  |||=||||||=|||||||||||||
targets:1086   AAAUCGCGUCUACGUCAGCGCGAU   1109

1.0 PREDICTED: Gossypium raimondii uncharacterized LOC105793143 (LOC105793143), mRNA uncharacterized LOC105793143(LOC105793143) coding protein psRNATarget
XM_012622070.1
ncRNA:24   UUUGGCGCAGGUGCAGUCGCGCUA   1
  |||=||||||||||||||||||*|
targets:1128   AAAUCGCGUCCACGUCAGCGCGCU   1151

1.5 PREDICTED: Gossypium raimondii uncharacterized LOC105793143 (LOC105793143), mRNA uncharacterized LOC105793143(LOC105793143) coding protein psRNATarget