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BaseInfo

ncRNA ID	novel_gra_miR641
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr13:1888459-1888607 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AUCCCUUUCCAAUAAGAGAAUGAC - 24
Stem-loop(if miRNA)	--    C         A           C  UAAACG     C              ---A     AA     UUUA   AUCC UUUCCAAUA GAGAAUGACAA CU      UUUUC UCUUGAUUUUUAGC    UUUUC  UUGGA    A   |||| ||||||||| ||||||||||| ||      ||||| ||||||||||||||    |||||  |||||   UAGG AAAGGUUAU CUCUUAUUGUU GA      AAAAG AGAACUAAAAAUUG    AAAAG  GAUUU    A UA    U         C           U  --UCUA     U              AAAA     AG     UUUU
Stem-loop sequence	AUCCCUUUCCAAUAAGAGAAUGACAACCUUAAACGUUUUCCUCUUGAUUUUUAGCAUUUUCAAUUGGAUUUAAAUUUUUUUAGGAGAAAAAAAAGUUAAAAAUCAAGAUGAAAAAUCUAGUUUGUUAUUCUCCUAUUGGAAAUGGAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012607075.1	ncRNA:24   CAGU-AAGAGAAUAACCUUUCCCUA   1   ||==-||*|*||||||||||||||* targets:1309   GUUGGUUGUGUUAUUGGAAAGGGAG   1333 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii KH domain-containing protein At4g18375 (LOC105782377), transcript variant X4, mRNA	KH domain-containing protein At4g18375(LOC105782377)	coding protein	psRNATarget
XM_012607074.1	ncRNA:24   CAGU-AAGAGAAUAACCUUUCCCUA   1   ||==-||*|*||||||||||||||* targets:1311   GUUGGUUGUGUUAUUGGAAAGGGAG   1335 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii KH domain-containing protein At4g18375 (LOC105782377), transcript variant X3, mRNA	KH domain-containing protein At4g18375(LOC105782377)	coding protein	psRNATarget
XM_012607071.1	ncRNA:24   CAGU-AAGAGAAUAACCUUUCCCUA   1   ||==-||*|*||||||||||||||* targets:1312   GUUGGUUGUGUUAUUGGAAAGGGAG   1336 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii KH domain-containing protein At4g18375 (LOC105782377), transcript variant X2, mRNA	KH domain-containing protein At4g18375(LOC105782377)	coding protein	psRNATarget
XM_012607070.1	ncRNA:24   CAGU-AAGAGAAUAACCUUUCCCUA   1   ||==-||*|*||||||||||||||* targets:1306   GUUGGUUGUGUUAUUGGAAAGGGAG   1330 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii KH domain-containing protein At4g18375 (LOC105782377), transcript variant X1, mRNA	KH domain-containing protein At4g18375(LOC105782377)	coding protein	psRNATarget