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BaseInfo

ncRNA ID novel_gra_miR637
Species Gossypium raimondii
Class miRNA
Genome position Chr13:12724629-12724695 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 44 - GCUAAAGAACAUGAUCUGUAGCAG - 67
Stem-loop(if miRNA) --    A   A    AC        A -A   GU
  GCUA AGA CAUG  CUUUAGUG C  UUU  G
  |||| ||| ||||  |||||||| |  |||
  CGAU UCU GUAC  GAAAUCGC G  AAA  G
GA    G   A    AA        C CG   AA
Stem-loop sequence GCUAAAGAACAUGACCUUUAGUGACAUUUGUGGAAAAAGCGCCGCUAAAGAACAUGAUCUGUAGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012619119.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*|||||||||||||||||
targets:1061   CCGCUAAAGAUCAUGUUCUUUAGC   1084

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*|||||||||||||||||
targets:1063   CCGCUAAAGAUCAUGUUCUUUAGC   1086

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*|||||||||||||||||
targets:1234   CCGCUAAAGAUCAUGUUCUUUAGC   1257

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*=|=||||||||||||||
targets:1146   CCGCUAAGGGUCAUGUUCUUUAGC   1169

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1232   UCGCUUAAGGUCAUGUUCUUUAGC   1255

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1318   UCGCUUAAGGUCAUGUUCUUUAGC   1341

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*=|=||||||||||||||
targets:1148   CCGCUAAGGGUCAUGUUCUUUAGC   1171

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1234   UCGCUUAAGGUCAUGUUCUUUAGC   1257

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1320   UCGCUUAAGGUCAUGUUCUUUAGC   1343

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  |*||||*=|=||||||||||||||
targets:1319   CCGCUAAGGGUCAUGUUCUUUAGC   1342

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1405   UCGCUUAAGGUCAUGUUCUUUAGC   1428

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:24   GACGAUGUCUAGUACAAGAAAUCG   1
  =*|||**||=||||||||||||||
targets:1491   UCGCUUAAGGUCAUGUUCUUUAGC   1514

3.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
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