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BaseInfo

ncRNA ID	novel_gra_miR636
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr13:12638664-12638763 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	80 - CUGAAGUGUUUGGGGGAACUC - 100
Stem-loop(if miRNA)	--       UG U       CUG       --   GU  G     -CU   A   GUUCCCC  A CACUUCA   GGGUUAU  GGG  CU CUCUU   CAG G   |||||||  | |||||||   |||||||  |||  || |||||   |||   CAAGGGG  U GUGAAGU   UCCAGUA  CCC  GA GGGAA   GUU C CU       GU U       -CA       GU   UG  G     AUU   C
Stem-loop sequence	GUUCCCCUGAUCACUUCACUGGGGUUAUGGGGUCUGCUCUUCUCAGAGCCUUGUUAAAGGGGAGGUCCCUGAUGACCUACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012627143.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||||||||||||||||* targets:192   AAGUUCCCCCAAACACUUCAA   212 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii serine hydroxymethyltransferase 7-like (LOC105797199), transcript variant X4, mRNA	serine hydroxymethyltransferase 7-like(LOC105797199)	coding protein	psRNATarget
XM_012627142.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||||||||||||||||* targets:190   AAGUUCCCCCAAACACUUCAA   210 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii serine hydroxymethyltransferase 7-like (LOC105797199), transcript variant X1, mRNA	serine hydroxymethyltransferase 7-like(LOC105797199)	coding protein	psRNATarget
XM_012602104.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |=|||*||||||||||||||* targets:162   GGGUUACCCCAAACACUUCAA   182 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii sulfate transporter 2.1 (LOC105778413), mRNA	sulfate transporter 2.1(LOC105778413)	coding protein	psRNATarget
XM_012607271.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *=|*|=|=||||||||||||| targets:85   CGGAUUCUCCAAACACUUCAG   105 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii mitochondrial import inner membrane translocase subunit TIM22-2-like (LOC105782497), mRNA	mitochondrial import inner membrane translocase subunit TIM22-2-like(LOC105782497)	coding protein	psRNATarget