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BaseInfo

ncRNA ID novel_gra_miR620
Species Gossypium raimondii
Class miRNA
Genome position Chr10:25947552-25947742 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - ACGGCAAUUAAUGGCUCAGUGACU - 24
Stem-loop(if miRNA) --                 A       U       CG    GU       A  UA                        AAAUA    GACC    G
  UCACUGAGUCGUUAAUU CUGUUAA GGUGUAA  GUAA  UAACGUG CA  UUAAAUCGUCAUUUCAAACGAAAA     UAGG    AAUU U
  ||||||||||||||||| ||||||| |||||||  ||||  ||||||| ||  ||||||||||||||||||||||||     ||||    |||| A
  AGUGACUCGGUAAUUAA GGCAAUU CCACAUU  CAUU  AUUGCAC GU  AAUUUAGUAGUAAAGUUUGUUUUU     AUUC    UUAA U
UC                 C       U       AU    UG       C  GC                        --AAA    --AA    A
Stem-loop sequence UCACUGAGUCGUUAAUUACUGUUAAUGGUGUAACGGUAAGUUAACGUGACAUAUUAAAUCGUCAUUUCAAACGAAAAAAAUAUAGGGACCAAUUGUAUAAAUUAACUUAAAAUUUUUGUUUGAAAUGAUGAUUUAACGUGCCACGUUAGUUUACUAUUACACCUUUAACGGCAAUUAAUGGCUCAGUGACU