Search result

BaseInfo

ncRNA ID	novel_gra_miR618
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:8116941-8117052 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	89 - CUAAAGGUCUUGGUCUUUAGCGGU - 112
Stem-loop(if miRNA)	--U       GU  U GU              GUGGGAAAAGCGUCGCUAAAGGUC    GCUAAAG  CA G  CUUUAGCGGCGUUU                        A    |||||||  || |  ||||||||||||||    CGAUUUC  GU C  GAAAUCGCCGCGAA                        U UGG       UG  U UG              AAAGGUGUUUGCGGCGAUUUCUGG
Stem-loop sequence	UGCUAAAGGUCAUGGUCUUUAGCGGCGUUUGUGGGAAAAGCGUCGCUAAAGGUCAUGGUCUUUAGCGGCGUUUGUGGAAAAAGCGCCGCUAAAGGUCUUGGUCUUUAGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599306.1	ncRNA:24   UGGCGAUUUCUGGUUCUGGAAAUC   1   *=****||=||||||||||||||| targets:2178   UUGAGGAAGGACCAAGACCUUUAG   2201 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii exocyst complex component EXO84B-like (LOC105776577), mRNA	exocyst complex component EXO84B-like(LOC105776577)	coding protein	psRNATarget
XM_012627970.1	ncRNA:24   UGG-----CGAUUUCUGGUUCUGGAAAUC   1   |=|-----|=||*|||||||||||*|||| targets:513   AUCAACGAGUUACAGACCAAGACCAUUAG   541 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor TGA6-like (LOC105798073), mRNA	transcription factor TGA6-like(LOC105798073)	coding protein	psRNATarget