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BaseInfo

ncRNA ID	novel_gra_miR616
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:24770291-24770434 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	121 - AAAGAACAUGGUCUUUAACGGCGU - 144
Stem-loop(if miRNA)	--AA        G      A      GUUUUCCU               A    G               UU     AGAACAUG UCUUUA CGGCGU        AAGCGCCGCUAAAGA CAUG UCUUUAGCGGCGUUU  U     |||||||| |||||| ||||||        ||||||||||||||| |||| |||||||||||||||     UCUUGUAC AGAAAU GCCGCG        UUUGUGGCGAUUUCU GUAC AGAAAUCGCCGCGAA  C GAUA        A      C      AAUCUUUU               G    A               UC
Stem-loop sequence	AAAGAACAUGGUCUUUAACGGCGUGUUUUCCUAAGCGCCGCUAAAGAACAUGGUCUUUAGCGGCGUUUUUUCCUAAGCGCCGCUAAAGAACAUGGUCUUUAGCGGUGUUUUUUUCUAAGCGCCGCUAAAGAACAUGUUCUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:24   UGCGGCAAUUUCUGGUACAAGAAA   1   |**|||*||||||=|||||||||| targets:1058   AGUCCGCUAAAGAUCAUGUUCUUU   1081 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   UGCGGCAAUUUCUGGUACAAGAAA   1   |**|||*||||||=|||||||||| targets:1060   AGUCCGCUAAAGAUCAUGUUCUUU   1083 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   UGCGGCAAUUUCUGGUACAAGAAA   1   |**|||*||||||=|||||||||| targets:1231   AGUCCGCUAAAGAUCAUGUUCUUU   1254 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget