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BaseInfo

ncRNA ID novel_gra_miR612
Species Gossypium raimondii
Class miRNA
Genome position Chr12:3456085-3456139 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 32 - GUUUGAUUUGGUGUGAUUAGACGU - 55
Stem-loop(if miRNA) --   A     A            AAAG
  GUC GAUCA CACUAAGUCAAA    A
  ||| ||||| ||||||||||||
  CAG UUAGU GUGGUUUAGUUU    C
UG   A     -            GUUG
Stem-loop sequence GUCAGAUCAACACUAAGUCAAAAAAGACGUUGUUUGAUUUGGUGUGAUUAGACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012604298.1
ncRNA:24   UGCA----GAUUAGUGUGGUUUAGUUUG   1
  *|||----|*|||||||||||||||||=
targets:13   CCGUGGUCCAAAUCACACCAAAUCAAAU   40

2.0 PREDICTED: Gossypium raimondii NADPH:quinone oxidoreductase-like (LOC105780150), transcript variant X5, mRNA NADPH:quinone oxidoreductase-like(LOC105780150) coding protein psRNATarget