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BaseInfo

ncRNA ID	novel_gra_miR609
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:34953260-34953462 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAGGACCUCCAUGGUACUUUUACC - 24
Stem-loop(if miRNA)	--     U           -  C    U     A     U        -A        --      AAUG     -----      U          --UUUAA  GU   UAAAA UACUGUGGAGG CC UGUG UAGGA UUAGA UGCAUUUU  CCCCUUUA  CUAAAA    AGGUA     GUCUUU CUGUUAAAAA       CA  G   ||||| ||||||||||| || |||| ||||| ||||| ||||||||  ||||||||  ||||||    |||||     |||||| ||||||||||       ||  G   AUUUU AUGGUACCUCC GG ACAU AUUCU AAUCU ACGUAAAA  GGGGAGAU  GAUUUU    UUCGU     UAGGAA GAUAAUUUUU       GU  C CC     C           A  A    U     C     U        CA        AA      --AA     UUAAC      -          UAAACAG  AA
Stem-loop sequence	UAAAAUUACUGUGGAGGCCCUGUGUUAGGAAUUAGAUUGCAUUUUACCCCUUUACUAAAAAAUGAGGUAGUCUUUUCUGUUAAAAAUUUAACAGUGGCAAUGGACAAAUUUUUUAAUAGAAGGAUCAAUUUGCUUAAUUUUAGAAUAGAGGGGACAAAAUGCAUUCUAACUCUUAUUACAAGGACCUCCAUGGUACUUUUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012617599.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   *||||||||||||||||||||||* targets:1488   UGUAAAAGUACCAUGGAGGUCCUA   1511 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105790159 (LOC105790159), mRNA	uncharacterized LOC105790159(LOC105790159)	coding protein	psRNATarget
XM_012621793.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   ||||||||||||||||||||||*| targets:2185   GGUAAAAGUACCAUGGAGGUCCCU   2208 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii K(+) efflux antiporter 4-like (LOC105792929), transcript variant X11, mRNA	K(+) efflux antiporter 4-like(LOC105792929)	coding protein	psRNATarget
XM_012620858.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   *||||||||||||||||||*|||| targets:1389   AGUAAAAGUACCAUGGAGGCCCUU   1412 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii 26S proteasome regulatory subunit 4 homolog A (LOC105792334), transcript variant X2, mRNA	26S proteasome regulatory subunit 4 homolog A(LOC105792334)	coding protein	psRNATarget
XM_012596519.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   |||||||||=|||||||||*|||| targets:747   GGUAAAAGUGCCAUGGAGGCCCUU   770 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105774142 (LOC105774142), mRNA	uncharacterized LOC105774142(LOC105774142)	coding protein	psRNATarget
XM_012627936.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   |||||||*||||||||||||=||| targets:1083   GGUAAAAAUACCAUGGAGGUUCUU   1106 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X3, mRNA	SAL1 phosphatase-like(LOC105798049)	coding protein	psRNATarget
XM_012594347.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   |||||||*||||||||||*||||| targets:1180   GGUAAAAAUACCAUGGAGAUCCUU   1203 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like (LOC105772868), transcript variant X2, mRNA	protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like(LOC105772868)	coding protein	psRNATarget
XM_012594346.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   |||||||*||||||||||*||||| targets:1189   GGUAAAAAUACCAUGGAGAUCCUU   1212 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like (LOC105772868), transcript variant X1, mRNA	protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like(LOC105772868)	coding protein	psRNATarget
XM_012597291.1	ncRNA:24   CCAUUUUCAUGGUACCUCCAGGAA   1   ||||||||||*||||||||*|||| targets:1880   GGUAAAAGUAGCAUGGAGGCCCUU   1903 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105774733 (LOC105774733), mRNA	uncharacterized LOC105774733(LOC105774733)	coding protein	psRNATarget