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BaseInfo

ncRNA ID	novel_gra_miR606
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:28711686-28711790 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	85 - CCAUUAACCUUGCUUGUGGAG - 105
Stem-loop(if miRNA)	--                           C     A     UUAUUU      U   CCACAAGCAAGGUUAGUGGGGUGACAC UGUCC UUUAU      UAUUUA U   ||||||||||||||||||||||||||| ||||| |||||      ||||||   GGUGUUCGUUCCAAUUACCCCAUUGUG ACGGG GAAUA      AUGAAU U GA                           U     -     --UCAU      U
Stem-loop sequence	CCACAAGCAAGGUUAGUGGGGUGACACCUGUCCAUUUAUUUAUUUUAUUUAUUUUUAAGUAUACUAUAAGGGGCAUGUGUUACCCCAUUAACCUUGCUUGUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012593123.1	ncRNA:21   GAGGUGUUCGUUCCAAUUACC   1   |||=||||*|||||||||||| targets:678   CUCUACAACCAAGGUUAAUGG   698 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105771720 (LOC105771720), mRNA	uncharacterized LOC105771720(LOC105771720)	coding protein	psRNATarget
XM_012583866.1	ncRNA:21   GAGGUGUUCGUUCCAAUUACC   1   *|||=**|||||||||||||| targets:2002   AUCCGGCAGCAAGGUUAAUGG   2022 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor MYC2-like (LOC105765004), transcript variant X1, mRNA	transcription factor MYC2-like(LOC105765004)	coding protein	psRNATarget
XM_012583867.1	ncRNA:21   GAGGUGUUCGUUCCAAUUACC   1   *|||=**|||||||||||||| targets:1952   AUCCGGCAGCAAGGUUAAUGG   1972 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor MYC2-like (LOC105765004), transcript variant X2, mRNA	transcription factor MYC2-like(LOC105765004)	coding protein	psRNATarget
XM_012583868.1	ncRNA:21   GAGGUGUUCGUUCCAAUUACC   1   *|||=**|||||||||||||| targets:1952   AUCCGGCAGCAAGGUUAAUGG   1972 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor MYC2-like (LOC105765004), transcript variant X3, mRNA	transcription factor MYC2-like(LOC105765004)	coding protein	psRNATarget