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BaseInfo

ncRNA ID novel_gra_miR602
Species Gossypium raimondii
Class miRNA
Genome position Chr12:16636552-16636662 [+]
Reference genome Graimondii2_0
Source SRR616257;SRR616255
Length 24
Mature sequence(if miRNA) 88 - CUAAAGGUCUUGGUCUUUAGCGGU - 111
Stem-loop(if miRNA) -- -      CU   U        C  AA   GUGGGAA     C         UC
  C CUAAAG  CAA AUCUUUAG GG  UUU       AAGCG CGCUAAAGG  C
  | ||||||  ||| |||||||| ||  |||       ||||| |||||||||
  G GAUUUC  GUU UGGAAAUC CC  GAA       UUUGC GCGAUUUCU  U
UG C      UG   C        A  AC   AAGGGUG     A         GG
Stem-loop sequence CCUAAAGCUCAAUAUCUUUAGCGGAAUUUGUGGGAAAAGCGCCGCUAAAGGUCCUGGUCUUUAGCGACGUUUGUGGGAAAAGCACCACUAAAGGUCUUGGUCUUUAGCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012599306.1
ncRNA:24   UGGCGAUUUCUGGUUCUGGAAAUC   1
  *=****||=|||||||||||||||
targets:2178   UUGAGGAAGGACCAAGACCUUUAG   2201

2.0 PREDICTED: Gossypium raimondii exocyst complex component EXO84B-like (LOC105776577), mRNA exocyst complex component EXO84B-like(LOC105776577) coding protein psRNATarget
XM_012627970.1
ncRNA:24   UGG-----CGAUUUCUGGUUCUGGAAAUC   1
  |=|-----|=||*|||||||||||*||||
targets:513   AUCAACGAGUUACAGACCAAGACCAUUAG   541

2.5 PREDICTED: Gossypium raimondii transcription factor TGA6-like (LOC105798073), mRNA transcription factor TGA6-like(LOC105798073) coding protein psRNATarget