ncRNA ID | novel_gra_miR602 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr12:16636552-16636662 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616257;SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 88 - CUAAAGGUCUUGGUCUUUAGCGGU - 111 |
Stem-loop(if miRNA) |
-- -      CU   U        C  AA   GUGGGAA     C         UC   C CUAAAG  CAA AUCUUUAG GG  UUU       AAGCG CGCUAAAGG  C   | ||||||  ||| |||||||| ||  |||       ||||| |||||||||   G GAUUUC  GUU UGGAAAUC CC  GAA       UUUGC GCGAUUUCU  U UG C      UG   C        A  AC   AAGGGUG     A         GG |
Stem-loop sequence | CCUAAAGCUCAAUAUCUUUAGCGGAAUUUGUGGGAAAAGCGCCGCUAAAGGUCCUGGUCUUUAGCGACGUUUGUGGGAAAAGCACCACUAAAGGUCUUGGUCUUUAGCGGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012599306.1 |
|
2.0 | PREDICTED: Gossypium raimondii exocyst complex component EXO84B-like (LOC105776577), mRNA | exocyst complex component EXO84B-like(LOC105776577) | coding protein | psRNATarget | |||||||||
XM_012627970.1 |
|
2.5 | PREDICTED: Gossypium raimondii transcription factor TGA6-like (LOC105798073), mRNA | transcription factor TGA6-like(LOC105798073) | coding protein | psRNATarget |