| ncRNA ID | novel_gra_miR600 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | Chr12:1555016-1555216 [+] |
| Reference genome | Graimondii2_0 |
| Source | SRR616257;SRR616255 |
| Length | 21 |
| Mature sequence(if miRNA) | 181 - AAGGGUCUGUUUGAUUGACGU - 201 |
| Stem-loop(if miRNA) |
--U UG UA UUAA UG - U AAAUACG C -A AAUAUUC - UA A UCAAU G AGAUUUUUA UUUUUU C C AUUUU GGA AUUUUA UAUUUA GAUUUAAAAA UUAAAGUUUAAU AUA U ||||| | ||||||||| |||||| | | ||||| ||| |||||| |||||| |||||||||| |||||||||||| ||| AGUUA U UCUGGGAAU AGAGAG G G UAAAA UCU UAAAGU GUAGAU CUAAAUUUUU AAUUUCAAAUUA UAU G UGC GU UG ---C GU A C -AUAAAA U AG GAACAAA U GC U |
| Stem-loop sequence | UUCAAUUGGUAAGAUUUUUAUUAAUUUUUUUGCCUAUUUUAAAUACGGGACAUUUUAAUAUUUAAAUAUUCGAUUUAAAAAUUAAAGUUUAAUUAAUAAUGUUAUCGAUUAAACUUUAAUUUUUUAAAUCAAACAAGUAGAUGGAUGAAAUUUCUAAAAUAAAAAUCGAGUGGAGAGACUAAGGGUCUGUUUGAUUGACGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012629782.1 |
|
2.5 | PREDICTED: Gossypium raimondii protein indeterminate-domain 9 (LOC105799304), mRNA | protein indeterminate-domain 9(LOC105799304) | coding protein | psRNATarget | |||||||||
| XM_012621089.1 |
|
3.0 | PREDICTED: Gossypium raimondii probable protein phosphatase 2C 34 (LOC105792489), transcript variant X1, mRNA | probable protein phosphatase 2C 34(LOC105792489) | coding protein | psRNATarget |