Search result

BaseInfo

ncRNA ID	novel_gra_miR598
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:11329568-11329624 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - UCAAAACGACGUCGUUUUGGGCAG - 24
Stem-loop(if miRNA)	-UC      A           GCA    U    AAAACG CGUCGUUUUGG   GCCU C    |||||| |||||||||||   ||||    UUUUGC GCGGCAAAACC   CGGA U GAA      C           --A    C
Stem-loop sequence	UCAAAACGACGUCGUUUUGGGCAGCCUUCUCAGGCACCAAAACGGCGCCGUUUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012618247.1	ncRNA:24   GACGGGUUUUGCUGCAGCAAAACU   1   =*|**=|||||||||||||||||| targets:43   UGGGGUAAAACGACGUCGUUUUGA   66 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105790575 (LOC105790575), transcript variant X1, mRNA	uncharacterized LOC105790575(LOC105790575)	coding protein	psRNATarget
XM_012580041.1	ncRNA:24   GACGGGUUUUGCUGCAGCAAAACU   1   **|*=||||||||=|||||||||= targets:39   AAGAUCAAAACGAUGUCGUUUUGG   62 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii nucleoside diphosphate kinase B-like (LOC105762134), mRNA	nucleoside diphosphate kinase B-like(LOC105762134)	coding protein	psRNATarget
XM_012611860.1	ncRNA:24   GAC-----GGGUUUUGCUGCAGCAAAACU   1   |||-----|=||*||||||*||||||||| targets:393   CUGGGGUACUCAUAACGACUUCGUUUUGA   421 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 66 kDa stress protein (LOC105785725), transcript variant X5, mRNA	66 kDa stress protein(LOC105785725)	coding protein	psRNATarget
XM_012611859.1	ncRNA:24   GAC-----GGGUUUUGCUGCAGCAAAACU   1   |||-----|=||*||||||*||||||||| targets:390   CUGGGGUACUCAUAACGACUUCGUUUUGA   418 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 66 kDa stress protein (LOC105785725), transcript variant X4, mRNA	66 kDa stress protein(LOC105785725)	coding protein	psRNATarget
XM_012611857.1	ncRNA:24   GAC-----GGGUUUUGCUGCAGCAAAACU   1   |||-----|=||*||||||*||||||||| targets:390   CUGGGGUACUCAUAACGACUUCGUUUUGA   418 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 66 kDa stress protein (LOC105785725), transcript variant X2, mRNA	66 kDa stress protein(LOC105785725)	coding protein	psRNATarget
XM_012611858.1	ncRNA:24   GAC-----GGGUUUUGCUGCAGCAAAACU   1   |||-----|=||*||||||*||||||||| targets:390   CUGGGGUACUCAUAACGACUUCGUUUUGA   418 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 66 kDa stress protein (LOC105785725), transcript variant X3, mRNA	66 kDa stress protein(LOC105785725)	coding protein	psRNATarget
XM_012611856.1	ncRNA:24   GAC-----GGGUUUUGCUGCAGCAAAACU   1   |||-----|=||*||||||*||||||||| targets:390   CUGGGGUACUCAUAACGACUUCGUUUUGA   418 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 66 kDa stress protein (LOC105785725), transcript variant X1, mRNA	66 kDa stress protein(LOC105785725)	coding protein	psRNATarget
XM_012590047.1	ncRNA:24   GACGGGUUUUGCUGCAGCAAAACU   1   ||**|||||*||||||||*||||| targets:206   CUAGCCAAACCGACGUCGCUUUGA   229 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serpin-ZX (LOC105769424), mRNA	serpin-ZX(LOC105769424)	coding protein	psRNATarget
XM_012586424.1	ncRNA:24   GAC--GGGUUUUGCUGCAGCAAAACU   1   |||--||=*|*||||||||||||||| targets:160   CUGAGCCUUAUACGACGUCGUUUUGA   185 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105766872 (LOC105766872), mRNA	uncharacterized LOC105766872(LOC105766872)	coding protein	psRNATarget