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BaseInfo

ncRNA ID novel_gra_miR596
Species Gossypium raimondii
Class miRNA
Genome position Chr1:11751000-11751080 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - UUGGCGCCUAUCUCAGAGGCGCCA - 24
Stem-loop(if miRNA) --        UA      --A                   AU
  UUGGCGCC  UCUCAG   GGCGCCAAUGGUGGUGCCU  C
  ||||||||  ||||||   |||||||||||||||||||  U
  AACCGCGG  AGAGUC   CCGUGGUUAUUAUCGCGGA  G
GU        --      AUA                   GG
Stem-loop sequence UUGGCGCCUAUCUCAGAGGCGCCAAUGGUGGUGCCUAUCUGGGAGGCGCUAUUAUUGGUGCCAUACUGAGAGGCGCCAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012632413.1
ncRNA:24   ACCGCGGAGACUCUAUCCGCGGUU   1
  |||||||||||||||||*||||||
targets:234   UGGCGCCUCUGAGAUAGACGCCAA   257

1.5 PREDICTED: Gossypium raimondii uncharacterized LOC105801078 (LOC105801078), mRNA uncharacterized LOC105801078(LOC105801078) coding protein psRNATarget
XM_012632413.1
ncRNA:24   ACCGCGGAGACUCUAUCCGCGGUU   1
  |||||||||||||||||||*|||*
targets:124   UGGCGCCUCUGAGAUAGGCACCAC   147

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105801078 (LOC105801078), mRNA uncharacterized LOC105801078(LOC105801078) coding protein psRNATarget