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BaseInfo

ncRNA ID	novel_gra_miR591
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:857016-857117 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	22
Mature sequence(if miRNA)	81 - UGACUCCUAGUACAAGGGCCUC - 102
Stem-loop(if miRNA)	--     C               C       C    A  ACAUACUAUUAU   UGACU CUAGUACAAGGGCCU UAUGGUA UUUU UC            U   ||||| ||||||||||||||| ||||||| |||| ||   ACUGA GAUCAUGUUUCUGGA GUACCAU AAAA AG            U AG     A               A       U    C  CCACACCCUACC
Stem-loop sequence	UGACUCCUAGUACAAGGGCCUCUAUGGUACUUUUAUCACAUACUAUUAUUUCCAUCCCACACCGACAAAAUUACCAUGAAGGUCUUUGUACUAGAAGUCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012596519.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   |||||||||||||||||||||| targets:762   GAGGCCCUUGUACUAGGAGUCA   783 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105774142 (LOC105774142), mRNA	uncharacterized LOC105774142(LOC105774142)	coding protein	psRNATarget
XM_012620858.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   |||||||||||||||||*|||| targets:1404   GAGGCCCUUGUACUAGGUGUCA   1425 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii 26S proteasome regulatory subunit 4 homolog A (LOC105792334), transcript variant X2, mRNA	26S proteasome regulatory subunit 4 homolog A(LOC105792334)	coding protein	psRNATarget
XM_012621457.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   *=||*|||||||=||||||||| targets:980   UGGGACCUUGUAUUAGGAGUCA   1001 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X2, mRNA	uncharacterized LOC105792719(LOC105792719)	coding protein	psRNATarget
XM_012621456.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   *=||*|||||||=||||||||| targets:980   UGGGACCUUGUAUUAGGAGUCA   1001 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X1, mRNA	uncharacterized LOC105792719(LOC105792719)	coding protein	psRNATarget
XM_012617602.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   ||*||||*|*|||||||||||| targets:2881   GAAGCCCCUAUACUAGGAGUCA   2902 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161)	coding protein	psRNATarget
XM_012617601.1	ncRNA:22   CUCCGGGAACAUGAUCCUCAGU   1   ||*||||*|*|||||||||||| targets:2968   GAAGCCCCUAUACUAGGAGUCA   2989 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC105790161), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC105790161)	coding protein	psRNATarget