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BaseInfo

ncRNA ID	novel_gra_miR589
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:857014-857119 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	86 - UUUGACUCCUAGUACAAGGGC - 106
Stem-loop(if miRNA)	--       C               C       C    A  ACAUACUAUUAU   UUUGACU CUAGUACAAGGGCCU UAUGGUA UUUU UC            U   ||||||| ||||||||||||||| ||||||| |||| ||   AGACUGA GAUCAUGUUUCUGGA GUACCAU AAAA AG            U UU       A               A       U    C  CCACACCCUACC
Stem-loop sequence	UUUGACUCCUAGUACAAGGGCCUCUAUGGUACUUUUAUCACAUACUAUUAUUUCCAUCCCACACCGACAAAAUUACCAUGAAGGUCUUUGUACUAGAAGUCAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012596519.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   ||||||||||||||||||||* targets:765   GCCCUUGUACUAGGAGUCAAU   785 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105774142 (LOC105774142), mRNA	uncharacterized LOC105774142(LOC105774142)	coding protein	psRNATarget
XM_012605166.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   **|||||||=||||||||||| targets:1193   UGCCUUGUAUUAGGAGUCAAA   1213 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012605165.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   **|||||||=||||||||||| targets:1253   UGCCUUGUAUUAGGAGUCAAA   1273 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012628058.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   **|||||||||||||*||||| targets:2311   AGCCUUGUACUAGGAUUCAAA   2331 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g63330-like (LOC105798131), mRNA	pentatricopeptide repeat-containing protein At1g63330-like(LOC105798131)	coding protein	psRNATarget
XM_012621793.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   |=||*|||||||*|||||||| targets:2203   GUCCCUGUACUAUGAGUCAAA   2223 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii K(+) efflux antiporter 4-like (LOC105792929), transcript variant X11, mRNA	K(+) efflux antiporter 4-like(LOC105792929)	coding protein	psRNATarget
XM_012632055.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   *=|*|||||||||||||||*| targets:740   AUCAUUGUACUAGGAGUCACA   760 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105800754 (LOC105800754), transcript variant X1, mRNA	uncharacterized LOC105800754(LOC105800754)	coding protein	psRNATarget
XM_012632056.1	ncRNA:21   CGGGAACAUGAUCCUCAGUUU   1   *=|*|||||||||||||||*| targets:758   AUCAUUGUACUAGGAGUCACA   778 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105800754 (LOC105800754), transcript variant X2, mRNA	uncharacterized LOC105800754(LOC105800754)	coding protein	psRNATarget