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BaseInfo

ncRNA ID	novel_gra_miR587
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:3166051-3166146 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	76 - UCCACAGCUUUCUUGAACUGU - 96
Stem-loop(if miRNA)	--       C   C         AUCAAGAAAAAAA  UAAAGCAUUUCAC   UCCACAG UUU UUGAACUGU             GC             C   ||||||| ||| |||||||||             ||             A   AGGUGUC AAA AACUUGACA             AA             U AA       U   A         -------CAAACU  AGUCAUGACAACG
Stem-loop sequence	UCCACAGCUUUCUUGAACUGUAUCAAGAAAAAAAGCUAAAGCAUUUCACCAUGCAACAGUACUGAAAUCAAACACAGUUCAAAAAAUCUGUGGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012632406.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |==|||||||||||*|||||| targets:1251   AUGGUUCAAGAAAGGUGUGGA   1271 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like (LOC105801048), transcript variant X4, mRNA	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like(LOC105801048)	coding protein	psRNATarget
XM_012632400.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |==|||||||||||*|||||| targets:1251   AUGGUUCAAGAAAGGUGUGGA   1271 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like (LOC105801048), transcript variant X3, mRNA	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like(LOC105801048)	coding protein	psRNATarget
XM_012615773.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |||*|||||*||||||||||| targets:1270   ACAAUUCAAUAAAGCUGUGGA   1290 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii neutral ceramidase (LOC105788737), transcript variant X2, mRNA	neutral ceramidase(LOC105788737)	coding protein	psRNATarget
XM_012615774.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |||*|||||*||||||||||| targets:1359   ACAAUUCAAUAAAGCUGUGGA   1379 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii neutral ceramidase (LOC105788737), transcript variant X3, mRNA	neutral ceramidase(LOC105788737)	coding protein	psRNATarget
XM_012615771.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |||*|||||*||||||||||| targets:1506   ACAAUUCAAUAAAGCUGUGGA   1526 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii neutral ceramidase (LOC105788737), transcript variant X1, mRNA	neutral ceramidase(LOC105788737)	coding protein	psRNATarget
XM_012611988.1	ncRNA:21   UGUCAAGUUCUUUCGACACCU   1   |=||||*|||||||||*|||| targets:17   AUAGUUAAAGAAAGCUUUGGA   37 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii alpha-L-fucosidase 3-like (LOC105785825), mRNA	alpha-L-fucosidase 3-like(LOC105785825)	coding protein	psRNATarget