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BaseInfo

ncRNA ID novel_gra_miR583
Species Gossypium raimondii
Class miRNA
Genome position Chr1:10981367-10981537 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 148 - GAAGGACCAAUUUGCUCUUUGAUC - 171
Stem-loop(if miRNA) --C              U     U            -G        G      U         - AAGAACGA   AAUAACUAAAAGUG
   CAAAGAGCAAGUUG UCUUU CUGUUAAAAUUU  AUUCAUUU UACAGU AAAAACUGG C        UAG              U
   |||||||||||||| ||||| ||||||||||||  |||||||| |||||| ||||||||| |        |||
   GUUUCUCGUUUAAC AGGAA GAUAAUUUUAAA  UAGGUAAA AUGUCG UUUUUGACC G        ACA              A
CUA              C     -            AG        G      U         A ------GG   UGUAGCCGUACUCU
Stem-loop sequence CCAAAGAGCAAGUUGUUCUUUUCUGUUAAAAUUUGAUUCAUUUGUACAGUUAAAAACUGGCAAGAACGAUAGAAUAACUAAAAGUGUAUCUCAUGCCGAUGUACAGGGACCAGUUUUUUGCUGUAGAAAUGGAUGAAAAUUUUAAUAGAAGGACCAAUUUGCUCUUUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012633992.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |*|||||||||||||||||||||=
targets:1172   GUUCAAAGAGCAAAUUGGUCCUUU   1195

1.0 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633993.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |*|||||||||||||||||||||=
targets:1224   GUUCAAAGAGCAAAUUGGUCCUUU   1247

1.0 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633989.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |*|||||||||||||||||||||=
targets:1228   GUUCAAAGAGCAAAUUGGUCCUUU   1251

1.0 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633990.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |*|||||||||||||||||||||=
targets:1292   GUUCAAAGAGCAAAUUGGUCCUUU   1315

1.0 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012628326.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=||||||||||||||||=||=
targets:1884   GAUUAAAGAGCAAAUUGGUCUUUU   1907

2.5 PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g33350 (LOC105798303), mRNA pentatricopeptide repeat-containing protein At1g33350(LOC105798303) coding protein psRNATarget
XM_012593614.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||||||*|||||||||||=||||
targets:1083   GAUCAAAAAGCAAAUUGGUUCUUC   1106

2.5 PREDICTED: Gossypium raimondii probable E3 ubiquitin-protein ligase RNF217 (LOC105772321), mRNA probable E3 ubiquitin-protein ligase RNF217(LOC105772321) coding protein psRNATarget
XM_012605166.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  *|||||||||||||*||||||||=
targets:1262   AAUCAAAGAGCAAACUGGUCCUUU   1285

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA uncharacterized LOC105780687(LOC105780687) coding protein psRNATarget
XM_012605165.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  *|||||||||||||*||||||||=
targets:1322   AAUCAAAGAGCAAACUGGUCCUUU   1345

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA uncharacterized LOC105780687(LOC105780687) coding protein psRNATarget
XM_012603439.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  *||||||||||||||||*|||||=
targets:1612   AAUCAAAGAGCAAAUUGAUCCUUU   1635

2.5 PREDICTED: Gossypium raimondii vinorine synthase-like (LOC105779614), mRNA vinorine synthase-like(LOC105779614) coding protein psRNATarget
XM_012628005.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=|||*||||||||||||*|||
targets:1767   GAUUAAAAAGCAAAUUGGUCAUUC   1790

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X4, mRNA uncharacterized LOC105798092(LOC105798092) coding protein psRNATarget
XM_012628002.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=|||*||||||||||||*|||
targets:1844   GAUUAAAAAGCAAAUUGGUCAUUC   1867

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X1, mRNA uncharacterized LOC105798092(LOC105798092) coding protein psRNATarget
XM_012628156.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=||||||*||||||*||||||
targets:2232   GAUUAAAGAGAAAAUUGAUCCUUC   2255

2.5 PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA beta-1,3-galactosyltransferase 15-like(LOC105798183) coding protein psRNATarget
XM_012628155.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=||||||*||||||*||||||
targets:2297   GAUUAAAGAGAAAAUUGAUCCUUC   2320

2.5 PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA beta-1,3-galactosyltransferase 15-like(LOC105798183) coding protein psRNATarget
XM_012628154.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  |||=||||||*||||||*||||||
targets:2308   GAUUAAAGAGAAAAUUGAUCCUUC   2331

2.5 PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA beta-1,3-galactosyltransferase 15-like(LOC105798183) coding protein psRNATarget
XM_012632055.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  *||=|||*||=||||||||||||*
targets:814   AAUUAAAAAGUAAAUUGGUCCUUA   837

3.0 PREDICTED: Gossypium raimondii uncharacterized LOC105800754 (LOC105800754), transcript variant X1, mRNA uncharacterized LOC105800754(LOC105800754) coding protein psRNATarget
XM_012632056.1
ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1
  *||=|||*||=||||||||||||*
targets:832   AAUUAAAAAGUAAAUUGGUCCUUA   855

3.0 PREDICTED: Gossypium raimondii uncharacterized LOC105800754 (LOC105800754), transcript variant X2, mRNA uncharacterized LOC105800754(LOC105800754) coding protein psRNATarget
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