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BaseInfo

ncRNA ID novel_gra_miR580
Species Gossypium raimondii
Class miRNA
Genome position Chr11:53660295-53660358 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 41 - UGCUAGUGCUCUGGCCUUUGGCGG - 64
Stem-loop(if miRNA) --     -U   C    CU            UU
  GCUAA  GCU GGGU  UUAGCGGUGUUU  A
  |||||  ||| ||||  ||||||||||||
  CGGUU  CGG CUCG  GAUCGUCGCAAG  U
GG     UC   U    -U            UC
Stem-loop sequence GCUAAUGCUCGGGUCUUUAGCGGUGUUUUUAUCUGAACGCUGCUAGUGCUCUGGCCUUUGGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012630733.1
ncRNA:24   GGCGGUUUCCGGUCUCGUGAUCGU   1
  |**=||||||*||*||||||||||
targets:709   CAAUCAAAGGGCAAAGCACUAGCA   732

2.5 PREDICTED: Gossypium raimondii myb-related protein B-like (LOC105799912), mRNA myb-related protein B-like(LOC105799912) coding protein psRNATarget