ncRNA ID | novel_gra_miR580 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr11:53660295-53660358 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616257 |
Length | 24 |
Mature sequence(if miRNA) | 41 - UGCUAGUGCUCUGGCCUUUGGCGG - 64 |
Stem-loop(if miRNA) |
--     -U   C    CU            UU   GCUAA  GCU GGGU  UUAGCGGUGUUU  A   |||||  ||| ||||  ||||||||||||   CGGUU  CGG CUCG  GAUCGUCGCAAG  U GG     UC   U    -U            UC |
Stem-loop sequence | GCUAAUGCUCGGGUCUUUAGCGGUGUUUUUAUCUGAACGCUGCUAGUGCUCUGGCCUUUGGCGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012630733.1 |
|
2.5 | PREDICTED: Gossypium raimondii myb-related protein B-like (LOC105799912), mRNA | myb-related protein B-like(LOC105799912) | coding protein | psRNATarget |