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BaseInfo

ncRNA ID	novel_gra_miR567
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr11:45135814-45135972 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	136 - AAUGAUCAAUUUGUUCUUUGAUCU - 159
Stem-loop(if miRNA)	--                  AUU     G     -    U    A   UU          CUA   UUACUGAUAAAAUA   AUUAAAGAACAAAUUGAU   UUCUA UGAAA UUUU UUCA UUU  CUGUUAAAAA   GCC              A   ||||||||||||||||||   ||||| ||||| |||| |||| |||  ||||||||||   |||              U   UAGUUUCUUGUUUAACUA   AAGAU AUUUU AAAG AGGU AAG  GGUAAUUUUU   UAG              A UC                  -GU     A     C    U    A   GU          AAU   AAAUGUUUAACGGU
Stem-loop sequence	AUUAAAGAACAAAUUGAUAUUUUCUAGUGAAAUUUUUUUCAAUUUUUCUGUUAAAAACUAGCCUUACUGAUAAAAUAAUAUGGCAAUUUGUAAAGAUUAAUUUUUAAUGGUGGAAAUGGAUGAAACUUUUAAUAGAAUGAUCAAUUUGUUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012633398.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   ||||=|||||||||||*||||||| targets:1960   AGAUUAAAGAACAAAUCGAUCAUU   1983 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii heat shock factor protein HSF8-like (LOC105802001), mRNA	heat shock factor protein HSF8-like(LOC105802001)	coding protein	psRNATarget
XM_012582272.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   ||||||||||=|||||||||=||| targets:1259   AGAUCAAAGAGCAAAUUGAUUAUU   1282 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X2, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012582271.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   ||||||||||=|||||||||=||| targets:1259   AGAUCAAAGAGCAAAUUGAUUAUU   1282 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X1, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012617940.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |||*||||||==|||||||||||| targets:1084   AGACCAAAGAGUAAAUUGAUCAUU   1107 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii glyoxylate/succinic semialdehyde reductase 1-like (LOC105790362), transcript variant X2, mRNA	glyoxylate/succinic semialdehyde reductase 1-like(LOC105790362)	coding protein	psRNATarget
XM_012606784.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||||||||==|||||||||||| targets:2755   AAAUCAAAGAGUAAAUUGAUCAUU   2778 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane 9 superfamily member 10-like (LOC105782211), transcript variant X2, mRNA	transmembrane 9 superfamily member 10-like(LOC105782211)	coding protein	psRNATarget
XM_012606783.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||||||||==|||||||||||| targets:2759   AAAUCAAAGAGUAAAUUGAUCAUU   2782 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane 9 superfamily member 10-like (LOC105782211), transcript variant X1, mRNA	transmembrane 9 superfamily member 10-like(LOC105782211)	coding protein	psRNATarget
XM_012620730.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||=|||||=|||||||=||||| targets:1868   AUAUUAAAGAGCAAAUUGGUCAUU   1891 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792247 (LOC105792247), transcript variant X2, mRNA	uncharacterized LOC105792247(LOC105792247)	coding protein	psRNATarget
XM_012620729.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||=|||||=|||||||=||||| targets:1907   AUAUUAAAGAGCAAAUUGGUCAUU   1930 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792247 (LOC105792247), transcript variant X1, mRNA	uncharacterized LOC105792247(LOC105792247)	coding protein	psRNATarget
XM_012603439.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||||||||=||||||||||*|| targets:1611   AAAUCAAAGAGCAAAUUGAUCCUU   1634 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii vinorine synthase-like (LOC105779614), mRNA	vinorine synthase-like(LOC105779614)	coding protein	psRNATarget
XM_012617499.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |||*=|||||=||||*|||||||| targets:471   AGACUAAAGAGCAAACUGAUCAUU   494 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 7 (LOC105790091), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 7(LOC105790091)	coding protein	psRNATarget
XM_012611743.1	ncRNA:24   UCUAGUUUCUUGUUUAACUAGUAA   1   |*||||*||||||||||||||*|| targets:1807   AUAUCACAGAACAAAUUGAUCCUU   1830 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC105785626), mRNA	calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC105785626)	coding protein	psRNATarget