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BaseInfo

ncRNA ID novel_gra_miR566
Species Gossypium raimondii
Class miRNA
Genome position Chr11:4949020-4949088 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 46 - CUGAAGACUAAGAGCUUUAGCGGC - 69
Stem-loop(if miRNA) --        G G       A        CUUCU
  CGCUAAAG U UUGGUCU UAGCGGCG     A
  |||||||| | ||||||| ||||||||     U
  GCGAUUUC A AAUCAGA GUCGCCGC     C
CG        G G       A        AAACA
Stem-loop sequence CGCUAAAGGUGUUGGUCUAUAGCGGCGCUUCUAUCACAAACGCCGCUGAAGACUAAGAGCUUUAGCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012604455.1
ncRNA:24   CGGCGAUUUCGAGAAUCAGAAGUC   1
  *==|||=||*=|||||||||||||
targets:767   UUUGCUGAAUUUCUUAGUCUUCAG   790

3.0 PREDICTED: Gossypium raimondii protein NDR1-like (LOC105780240), mRNA protein NDR1-like(LOC105780240) coding protein psRNATarget