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BaseInfo

ncRNA ID novel_gra_miR565
Species Gossypium raimondii
Class miRNA
Genome position Chr11:44424887-44424980 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 71 - AGCAUCUCGCACUGGCGUGGACGC - 94
Stem-loop(if miRNA) --           C            UA           C   UC U
  GUCCAUGUCAG GCGAGAUGCUGA  UGGAAGGAAAU GCG  C U
  ||||||||||| ||||||||||||  ||||||||||| |||  |
  CAGGUGCGGUC CGCUCUACGACU  ACCUUCCUUUA CGC  G G
CG           A            GC           A   CC A
Stem-loop sequence GUCCAUGUCAGCGCGAGAUGCUGAUAUGGAAGGAAAUCGCGUCCUUGAGCCCGCAAUUUCCUUCCACGUCAGCAUCUCGCACUGGCGUGGACGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012627277.1
ncRNA:24   CGCAGGUGCGGUCACGCUCUACGA   1
  |****||=|||*||||||||||||
targets:1603   GGUAGCAUGCCCGUGCGAGAUGCU   1626

2.5 PREDICTED: Gossypium raimondii polyadenylate-binding protein 2-like (LOC105797316), mRNA polyadenylate-binding protein 2-like(LOC105797316) coding protein psRNATarget