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BaseInfo

ncRNA ID novel_gra_miR557
Species Gossypium raimondii
Class miRNA
Genome position Chr11:53660335-53660400 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - UGCUAGUGCUCUGGCCUUUGGCGG - 24
Stem-loop(if miRNA) --U     U C    -  CU        A   UU
   GCUAG G UCUG GC  UUGGCGGC UUU  A
   ||||| | |||| ||  |||||||| |||
   CGAUU C AGGC CG  AAUCGCCG GAA  U
CGG     U U    U  -U        C   UA
Stem-loop sequence UGCUAGUGCUCUGGCCUUUGGCGGCAUUUUUAUAUAAGCGCCGCUAAUGCUCGGAUCUUUAGCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012630733.1
ncRNA:24   GGCGGUUUCCGGUCUCGUGAUCGU   1
  |**=||||||*||*||||||||||
targets:709   CAAUCAAAGGGCAAAGCACUAGCA   732

2.5 PREDICTED: Gossypium raimondii myb-related protein B-like (LOC105799912), mRNA myb-related protein B-like(LOC105799912) coding protein psRNATarget