ncRNA ID | novel_gra_miR557 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr11:53660335-53660400 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGCUAGUGCUCUGGCCUUUGGCGG - 24 |
Stem-loop(if miRNA) |
--U     U C    -  CU        A   UU    GCUAG G UCUG GC  UUGGCGGC UUU  A    ||||| | |||| ||  |||||||| |||    CGAUU C AGGC CG  AAUCGCCG GAA  U CGG     U U    U  -U        C   UA |
Stem-loop sequence | UGCUAGUGCUCUGGCCUUUGGCGGCAUUUUUAUAUAAGCGCCGCUAAUGCUCGGAUCUUUAGCGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012630733.1 |
|
2.5 | PREDICTED: Gossypium raimondii myb-related protein B-like (LOC105799912), mRNA | myb-related protein B-like(LOC105799912) | coding protein | psRNATarget |