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BaseInfo

ncRNA ID	novel_gra_miR554
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr11:30534532-30534698 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAGCGCCGCUAAAGAACAUGGCCU - 24
Stem-loop(if miRNA)	--              AA    GC              GCGGGA               AA    GC          -A   GC   AAGCGCCGCUAAAG  CAUG  CUUUAGUGGCGUUU      AAAGCGCCGCUAAAG  CAUG  CUUUAGCGGC  UUU  G   ||||||||||||||  ||||  ||||||||||||||      |||||||||||||||  ||||  ||||||||||  |||   UUUGCGGCGAUUUC  GUAC  GAAAUCGCCGCGAA      UUUUGCGGCGAUUUC  GUAC  GAAAUCGCCG  AAA  G CG              CA    AA              AAGGGC               CG    AA          CG   AA
Stem-loop sequence	AAGCGCCGCUAAAGAACAUGGCCUUUAGUGGCGUUUGCGGGAAAAGCGCCGCUAAAGAACAUGGCCUUUAGCGGCAUUUGCGGAAAAAGCGCCGCUAAAGAACAUGGCCUUUAGCGGCGUUUUCGGGAAAAGCGCCGCUAAAGAACAUGACCUUUAGCGGCGUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1239   AGGUCAUGUUCUUUAGCGGCGUUU   1262 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1325   AGGUCAUGUUCUUUAGCGGCGUUU   1348 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   =||=|||||||||||||||||=|| targets:1153   GGGUCAUGUUCUUUAGCGGCGUUU   1176 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1241   AGGUCAUGUUCUUUAGCGGCGUUU   1264 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1327   AGGUCAUGUUCUUUAGCGGCGUUU   1350 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   =||=|||||||||||||||||=|| targets:1155   GGGUCAUGUUCUUUAGCGGCGUUU   1178 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1412   AGGUCAUGUUCUUUAGCGGCGUUU   1435 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   |||=|||||||||||||||||=|| targets:1498   AGGUCAUGUUCUUUAGCGGCGUUU   1521 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   =||=|||||||||||||||||=|| targets:1326   GGGUCAUGUUCUUUAGCGGCGUUU   1349 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012586817.1	ncRNA:24   UCCGGUACAAGAAAUCGCCGCGAA   1   ||**||||**|||||||||||||| targets:3384   AGAACAUGACCUUUAGCGGCGCUU   3407 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii probable disease resistance protein At4g27220 (LOC105767319), mRNA	probable disease resistance protein At4g27220(LOC105767319)	coding protein	psRNATarget