| ncRNA ID | novel_gra_miR552 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | Chr11:3367274-3367455 [+] |
| Reference genome | Graimondii2_0 |
| Source | SRR616257 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - UGAAUUGCCAUGUAGAUGACACAU - 24 |
| Stem-loop(if miRNA) |
-- A A CA C AUUUUAUA U - AUUUUUAUACUUUUUUUAAUAAAUUUAUUGAUUU UG AUUGCCAUGUAGAUG CA UCAG AUUUAAUUA AAAUUU AAA AGUA U || ||||||||||||||| || |||| ||||||||| |||||| ||| |||| AC UAAUGGUGCAUCUAC GU AGUU UAAAUUAAU UUAAAA AUU AAAA U AC C C AC A -------- - U UUUUUUAGUUCUUGUAAAUAUUAAAAAUUUUUAA |
| Stem-loop sequence | UGAAUUGCCAUGUAGAUGACACAUCAGCAUUUAAUUAAUUUUAUAAAAUUUUAAAAGUAAUUUUUAUACUUUUUUUAAUAAAUUUAUUGAUUUUUAAUUUUUAAAAAUUAUAAAUGUUCUUGAUUUUUUAAAAUUUAAAAAUUUAAUUAAAUAUUGACAUGCCAUCUACGUGGUAAUCCACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012585439.1 |
|
2.5 | PREDICTED: Gossypium raimondii protein NLRC3 (LOC105766112), transcript variant X4, mRNA | protein NLRC3(LOC105766112) | coding protein | psRNATarget | |||||||||
| XM_012585438.1 |
|
2.5 | PREDICTED: Gossypium raimondii protein NLRC3 (LOC105766112), transcript variant X1, mRNA | protein NLRC3(LOC105766112) | coding protein | psRNATarget |