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BaseInfo

ncRNA ID novel_gra_miR550
Species Gossypium raimondii
Class miRNA
Genome position Chr11:26572986-26573126 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 118 - CUAAUGCCUAGGGCUUUAGCGGCG - 141
Stem-loop(if miRNA) --       U    G    U          UUUUGG           A   AAA   --    ----CC    A
  CCGCUAA GCUC GGGU UUAGCGGCAU      GAAAGCGCCGC AAA   CCU  AAGC      AACG C
  ||||||| |||| |||| ||||||||||      ||||||||||| |||   |||  ||||      ||||
  GGCGAUU CGGG UCCG AAUCGCCGUG      UUUUUGCGGCG UUU   GGG  UUCG      UUGC U
GC       U    A    U          UAUGAA           A   -AG   CU    AAUUUU    C
Stem-loop sequence CCGCUAAUGCUCGGGGUUUUAGCGGCAUUUUUGGGAAAGCGCCGCAAAAAAACCUAAGCCCAACGACUCCGUUUUUUAAGCUUUCGGGGAUUUAGCGGCGUUUUUAAGUAUGUGCCGCUAAUGCCUAGGGCUUUAGCGGCG