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BaseInfo

ncRNA ID	novel_gra_miR525
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr11:10538415-10538597 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AGAGCAGAUUGGUCCUUUCUGUCA - 24
Stem-loop(if miRNA)	--AGAGC            U    CA       --AUUUACUUA  C             CAUGA   -    AAUA     ACAU          C        AGAUUGGUCCUU CUGU  AAAAGUU           UA UGUUAAAAAUUGG     CUA AUGU    AUGAG    UGGCACAUGG G        |||||||||||| ||||  |||||||           || |||||||||||||     ||| ||||    |||||    ||||||||||        UUUAACCAGGAA GACA  UUUUCAA           AU ACAAUUUUUAACC     GAU UACA    UAUUC    AUCGUGUACC U UUUUUUA            -    -A       GGCAUAUAAAG  A             --AAG   A    AUCG     ----          G
Stem-loop sequence	AGAGCAGAUUGGUCCUUUCUGUCAAAAAGUUAUUUACUUAUACUGUUAAAAAUUGGCAUGACUAAUGUAAUAAUGAGACAUUGGCACAUGGCGUGCCAUGUGCUACUUAUGCUAACAUAUAGGAACCAAUUUUUAACAAUAGAAAUAUACGGAACUUUUAACAGAAGGACCAAUUUAUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012616734.1	ncRNA:24   ACUGUCUUUCCUGGUUAGACGAGA   1   |*|=|||||||||||||=|||||| targets:2003   UAAUAGAAAGGACCAAUUUGCUCU   2026 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii heat shock factor protein HSF8-like (LOC105789369), mRNA	heat shock factor protein HSF8-like(LOC105789369)	coding protein	psRNATarget