Search result

BaseInfo

ncRNA ID novel_gra_miR522
Species Gossypium raimondii
Class miRNA
Genome position Chr11:10453863-10453942 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - UAUGACACUUUGAGAUUGUGCCAC - 24
Stem-loop(if miRNA) --                            A  C   AAA
  UAUGACACUUUGAGAUUGUGCCACAUUA CA UUA   A
  |||||||||||||||||||||||||||| || |||
  AUAUUGUGAGAUUCUAACAUGGUGUAGU GU GAU   U
UU                            A  A   AAA
Stem-loop sequence UAUGACACUUUGAGAUUGUGCCACAUUAACACUUAAAAAUAAAUAGAUGAUGAUGUGGUACAAUCUUAGAGUGUUAUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012592353.1
ncRNA:24   CACCGUGUUAGAGUUUCACAGUAU   1
  *****|||||=|||||||||=|||
targets:43   CAACAACAAUUUCAAAGUGUUAUA   66

2.5 PREDICTED: Gossypium raimondii putative pumilio homolog 8, chloroplastic (LOC105770970), mRNA putative pumilio homolog 8, chloroplastic(LOC105770970) coding protein psRNATarget