| ncRNA ID | novel_gra_miR521 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | Chr11:19007608-19007788 [-] |
| Reference genome | Graimondii2_0 |
| Source | SRR616257 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - UGGGUGUUGGGACAUUGAUGGCUG - 24 |
| Stem-loop(if miRNA) |
-- A UG -G ----- A UAAAAAAAUU UG -AA ------ - A UUUUUCA A GC CAU AUG UCGGCACCCAA UUU UCAGA UUUGGU GGAG CUAGU UG GCUAGCAUC CA UAUU A || ||| ||| ||||||||||| ||| ||||| |||||| |||| ||||| || ||||||||| || |||| A CG GUA UAC GGUUGUGGGUU AAA AGUUU AGGCCA UUUC GAUCG AC CGGUCGUAG GU AUAA A GU - GU AG UUAAA A ---------- UG CAC GUAGUU A - UUUUUAA A |
| Stem-loop sequence | GCACAUUGAUGGUCGGCACCCAAUUUAUCAGAUAAAAAAAUUUUUGGUUGGGAGAACUAGUUGGCUAGCAUCACAUUUUUCAUAUUAAAAAAAUAAAUUUUUUGGAUGCUGGCACAUUGAUGGCUAGCACCUUUGUACCGGAUUUGAAAAAAAAUUUUGGGUGUUGGGACAUUGAUGGCUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012607777.1 |
|
3.0 | PREDICTED: Gossypium raimondii glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like (LOC105782782), transcript variant X2, mRNA | glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like(LOC105782782) | coding protein | psRNATarget | |||||||||
| XM_012607767.1 |
|
3.0 | PREDICTED: Gossypium raimondii glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like (LOC105782782), transcript variant X1, mRNA | glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like(LOC105782782) | coding protein | psRNATarget |