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BaseInfo

ncRNA ID	novel_gra_miR517
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr11:25905305-25905469 [-]
Reference genome	Graimondii2_0
Source	SRR616257;SRR616255
Length	24
Mature sequence(if miRNA)	1 - AAGGAUCAAUUUGCUCUUUGAUCU - 24
Stem-loop(if miRNA)	--      U      C     -                         C      U    --------------    -  -CC       U   AUUAAA AGCAAA UGAUU UUUUUGUUAAAAAUUUCAUCUAUUU UAUUGU AAAA              GCUG GU   UUUUAUG U   |||||| |||||| ||||| ||||||||||||||||||||||||| |||||| ||||              |||| ||   |||||||   UAGUUU UCGUUU ACUAG AAAAACAAUUUUUAAAGUAGGUAAA AUGAUA UUUU              CGAU CA   GGAGUAC A UC      C      A     G                         U      U    UAAACACAUCCACA    A  CAU       A
Stem-loop sequence	AUUAAAUAGCAAACUGAUUUUUUUGUUAAAAAUUUCAUCUAUUUCUAUUGUUAAAAGCUGGUCCUUUUAUGUUAACAUGAGGUACACAUAGCACACCUACACAAAUUUUUUAUAGUAUAAAUGGAUGAAAUUUUUAACAAAAAGGAUCAAUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012603439.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   |*|||||||||||||||||||||| targets:1611   AAAUCAAAGAGCAAAUUGAUCCUU   1634 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii vinorine synthase-like (LOC105779614), mRNA	vinorine synthase-like(LOC105779614)	coding protein	psRNATarget
XM_012633992.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1171   AGUUCAAAGAGCAAAUUGGUCCUU   1194 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1223   AGUUCAAAGAGCAAAUUGGUCCUU   1246 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1227   AGUUCAAAGAGCAAAUUGGUCCUU   1250 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1291   AGUUCAAAGAGCAAAUUGGUCCUU   1314 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012628156.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2231   AGAUUAAAGAGAAAAUUGAUCCUU   2254 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628155.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2296   AGAUUAAAGAGAAAAUUGAUCCUU   2319 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628154.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2307   AGAUUAAAGAGAAAAUUGAUCCUU   2330 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012603731.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   *|*||||||||||*|||||||||| targets:1602   UGUUCAAAGAGCACAUUGAUCCUU   1625 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii prolyl 3-hydroxylase 2 (LOC105779800), transcript variant X2, mRNA	prolyl 3-hydroxylase 2(LOC105779800)	coding protein	psRNATarget
XM_012611743.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   |*||||*|||*||||||||||||| targets:1807   AUAUCACAGAACAAAUUGAUCCUU   1830 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC105785626), mRNA	calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC105785626)	coding protein	psRNATarget
XM_012600317.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=|||*||=|||||||||||| targets:807   AGAUUAAAAAGUAAAUUGAUCCUU   830 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X2, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget
XM_012600316.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=|||*||=|||||||||||| targets:945   AGAUUAAAAAGUAAAUUGAUCCUU   968 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X1, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget