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BaseInfo

ncRNA ID	novel_gra_miR508
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr11:8591151-8591350 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	25
Mature sequence(if miRNA)	176 - CUAAAGACCAUGACCUUUAGCGGCU - 200
Stem-loop(if miRNA)	--         A   G         C   AUUUUAUGCAA     -        C  CAGGGUAUUUAGCGGCGUUUGUAAGGGAAGCGCCGCUAAAGGUAAUU   CCGCUAAAG UCA GGUCUUUAG GGC           AAGCG CCGCUAAA AU                                               G   ||||||||| ||| ||||||||| |||           ||||| |||||||| ||   GGCGAUUUC AGU CCAGAAAUC CCG           GUUUU UUUGCGGC GA                                               U UC         C   A         A   ------CGAAU     G        -  CUUCCAGUACCUGAAAUCACCACGAAUGGUUUGUUUGCGGCGAUUUC
Stem-loop sequence	CCGCUAAAGAUCAGGGUCUUUAGCGGCAUUUUAUGCAAAAGCGCCGCUAAACAUCAGGGUAUUUAGCGGCGUUUGUAAGGGAAGCGCCGCUAAAGGUAAUUGUCUUUAGCGGCGUUUGUUUGGUAAGCACCACUAAAGUCCAUGACCUUCAGCGGCGUUUGUUUUGUAAGCGCCACUAAAGACCAUGACCUUUAGCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:25   UCG--GCGAUUUCCAGUACCAGAAAUC   1   |||--||||||=|||||||*||||||| targets:1142   AGCACCGCUAAGGGUCAUGUUCUUUAG   1168 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UC-GGCGAUUUCCAGUACCAGAAAUC   1   ||-|||||||||*|||||*||||||| targets:1058   AGUCCGCUAAAGAUCAUGUUCUUUAG   1083 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1230   CGUCGCUUAAGGUCAUGUUCUUUAG   1254 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619119.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1316   CGUCGCUUAAGGUCAUGUUCUUUAG   1340 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCG--GCGAUUUCCAGUACCAGAAAUC   1   |||--||||||=|||||||*||||||| targets:1144   AGCACCGCUAAGGGUCAUGUUCUUUAG   1170 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UC-GGCGAUUUCCAGUACCAGAAAUC   1   ||-|||||||||*|||||*||||||| targets:1060   AGUCCGCUAAAGAUCAUGUUCUUUAG   1085 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1232   CGUCGCUUAAGGUCAUGUUCUUUAG   1256 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1318   CGUCGCUUAAGGUCAUGUUCUUUAG   1342 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCG--GCGAUUUCCAGUACCAGAAAUC   1   |||--||||||=|||||||*||||||| targets:1315   AGCACCGCUAAGGGUCAUGUUCUUUAG   1341 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UC-GGCGAUUUCCAGUACCAGAAAUC   1   ||-|||||||||*|||||*||||||| targets:1231   AGUCCGCUAAAGAUCAUGUUCUUUAG   1256 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1403   CGUCGCUUAAGGUCAUGUUCUUUAG   1427 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:25   UCGGCGAUUUCCAGUACCAGAAAUC   1   *|=||||*|||||||||*||||||| targets:1489   CGUCGCUUAAGGUCAUGUUCUUUAG   1513 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget